Procambarus clarkii (red swamp crayfish): 123758365
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Entry
123758365 CDS
T07930
Symbol
l(2)37Cb
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123758365 (l(2)37Cb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123758365 (l(2)37Cb)
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123758365 (l(2)37Cb)
Spliceosome [BR:
pcla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123758365 (l(2)37Cb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
PWI
AAA_19
nSTAND3
T2SSE
Motif
Other DBs
NCBI-GeneID:
123758365
NCBI-ProteinID:
XP_045598629
LinkDB
All DBs
Position
11:complement(32043782..32054425)
Genome browser
AA seq
1022 aa
AA seq
DB search
MEDSLKLWVSHRLHDVMGMSDSTVAEYLIRITQRLPSKNHVLEELREEIPVDSAIEKFVG
ELWDKVKGAAAKPGAATSSRQDASAAKKRKVEESSDSEGEGPKLLKGSGEQNSDDDEEKQ
RLKDLRDRDEYAERLRLRDEEQTKNLADKGDKKAFEEAAKRLQLEKEDREKILPKLRVES
RRKYLVKRKDDKLKELEADIVDDEYLFEEEALTAREKKERDYKKTVLQLAKDYDKVREAE
NVQRYVMPEEGGSVDDRYVEVDEREKKRGYDQKKWEEDQMRGTSLSFGARDKAQKYQEQE
KEYNLVLEDEIEFIKSLPLAGTLKKKKKKKKKKESDSEHSSSSEEEEEEEEDEQEPKFSE
AQKKKLSIDEVRKSLPVFPFREALLDAIKEHQILIIEGETGSGKTTQIPQYLFESGFCSD
GKKIGCTQPRRVAAMSVAARVSEEMGKKLGNEVGYSIRFEDCTSDRTKIKYMTDGMLLRE
FLMEPSLDGYSVMIIDEAHERTLHTDILFGLLKDITRFRSDLKLLISSATLDSAKFSDFF
DEAPIFRIPGRRYPVHIYYTRSPEANYIDAAAVTILQIHITQHLGDILLFLTGQEEIEAC
QEILTERIRALGSKIRELIILPIYANLPSEMQAKIFEPTPPKARKVILATNIAETSLTID
GIKYVIDPGYAKQNYFNARSGMESLIVVPISRASANQRAGRAGRVGPGKCFRLYTQWAFE
NEMDENTIPEIQRVNLGNVVLQLKSLGIHDLINFDYLDPPPAESLILALEQLYALKALNH
KGELTSTGRKMAELPVDPMMSRMILAGDQYKVVEEILTIAAMLSVNGSIFYRPKDKAIHA
DTARKNFFHPDGDHLTLMNVYNEWAGTDYSSQWCYEVFIQYRSMKRARDIRDQLVGLMER
VEVQLTSNPGDSVNIRKAITSGYFYHVARFSKGGMYKTAKKNQTVMMHPQSCLVEDLPRW
VVYHELVMTTKEYMRNVVVIDGKWLLEVAPHYYRDNEVHDTTSKKMPKVKGKAREELQKE
YN
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggaggatagtctgaagctgtgggttagccataggcttcatgatgttatggggatgagt
gactcgactgtagctgaatatctcatacggataacgcagcgactccccagtaaaaaccac
gtgttggaagagctcagggaagaaattccagtggatagtgcaatagagaaatttgttggt
gagctttgggacaaagttaaaggtgctgctgctaagcctggtgctgctacatctagcaga
caggatgcatctgctgcaaagaaacgaaaggtggaggaaagctctgactctgaaggtgaa
ggacctaagctactgaagggttctggagaacaaaattctgatgatgatgaagagaaacag
agactaaaggacctgcgtgaccgtgatgaatatgctgaaagattacgactgcgagatgaa
gagcagacaaaaaatttggctgataaaggggataaaaaggcatttgaagaggctgcaaaa
agattgcagttagaaaaggaagatcgtgaaaaaatccttcctaaactacgagtggaatct
cgccgaaagtaccttgtaaagcgcaaggatgacaaattaaaagaattggaagcagacatt
gtagatgatgagtatctctttgaagaggaagctcttaccgcgagggagaaaaaagaacgg
gattataaaaagactgttcttcagttggccaaagattatgacaaagtaagagaagcagaa
aatgttcagaggtatgtaatgcctgaggaaggtggaagtgttgatgatagatatgtagaa
gttgatgagagagaaaagaaacgtggttatgaccagaagaaatgggaggaagatcagatg
agaggaacatccctttcatttggagcaagagacaaggctcagaaatatcaagagcaagag
aaggaatacaatcttgttttggaagatgaaattgaattcatcaaatcacttccattagca
ggtacgcttaaaaagaagaaaaagaagaagaagaagaaagaatcagattctgagcatagt
tcttcatcagaggaggaggaggaggaggaggaagatgagcaagaacctaagttttctgag
gcacagaagaagaagctttcaatagatgaagtaagaaagagtttacctgtgtttccattc
agggaagctttgctagatgccatcaaagaacatcagatactaatcattgaaggggagact
gggtctggtaaaaccacacaaataccacaatatttgttcgagtctggattttgtagcgac
ggcaagaaaattggctgcactcagccgagaagagttgctgcaatgagtgtagcggcccgt
gtttctgaagaaatgggcaaaaagcttggaaatgaagtcggatacagcattcgatttgaa
gattgcaccagtgatcgtacaaaaataaagtacatgacagatggtatgttattgagagaa
tttctcatggagcctagtttagatggttacagtgttatgattattgatgaggcccatgaa
aggaccttgcatacagatatactttttggcttactgaaggacatcacaagatttcgcagt
gacttaaagttgctcatatcaagtgccactttagactcggcaaagttttcagattttttt
gacgaagctcctatttttcgaataccaggcagacgatacccagtccatatttattataca
agaagcccagaagctaactatattgatgctgctgctgtgacaattttgcagatccatata
actcaacatcttggagatattttgttgtttctcacaggtcaggaagagattgaggcctgt
caagaaattttaacagaaagaatcagagctcttggaagtaaaattcgtgaactaataata
ttgccaatatatgccaatttgccttctgaaatgcaagccaagatatttgaaccaacacca
cctaaagcaagaaaggttattcttgcaacaaacattgctgaaacatccctcactattgat
ggtataaagtatgttatagaccctggctatgcaaagcagaactattttaatgcaaggagt
ggcatggagtcactaatagtagttccaatatctagagcatcagctaatcagagagcaggc
cgagcaggaagagttggcccaggtaaatgttttaggctttatactcagtgggcatttgag
aatgaaatggatgaaaataccattccagaaattcagcgggttaacctgggaaatgttgtt
cttcagcttaaatcccttggtatccatgacctcatcaactttgattacttggacccacca
ccagctgaatcccttatccttgctcttgaacagttatatgccttgaaagctttgaaccac
aaaggtgagctgacctctactggtagaaaaatggcggaacttccagtggatcctatgatg
tcacggatgatattagctggtgatcagtataaagttgtggaggaaattctcacaattgct
gcaatgttatctgtaaatggctctatattttataggcctaaagataaagcaattcatgct
gatactgcacgaaagaatttctttcatccagatggtgatcacttaactctaatgaatgtt
tacaatgagtgggcaggaacagattattcttcacagtggtgttatgaggtctttattcag
tatcggtccatgaaaagagcgagggatattagagaccagcttgttggactcatggaacgg
gtagaagtacagttaacttccaatcctggtgactctgttaatatcagaaaggctattact
tcgggatatttctaccatgtggcaagatttagtaaaggaggtatgtataaaactgcaaaa
aaaaatcaaactgtgatgatgcacccacagtcgtgtttggtagaggatctgccgagatgg
gttgtatatcatgagttagttatgacaacgaaggaatatatgcgaaatgtggtggttatt
gatggcaagtggcttttagaagttgctcctcattactaccgtgataatgaagtacacgac
acaactagtaagaagatgccgaaggttaaagggaaagcaagagaggagttgcagaaagaa
tataattag
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