Procambarus clarkii (red swamp crayfish): 123759021
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Entry
123759021 CDS
T07930
Symbol
Hel25E
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03013
Nucleocytoplasmic transport
pcla03015
mRNA surveillance pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123759021 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
123759021 (Hel25E)
03015 mRNA surveillance pathway
123759021 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123759021 (Hel25E)
03041 Spliceosome [BR:
pcla03041
]
123759021 (Hel25E)
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123759021 (Hel25E)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123759021 (Hel25E)
Spliceosome [BR:
pcla03041
]
Complex C
Other components
EJC/TREX
123759021 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123759021 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123759021
NCBI-ProteinID:
XP_045599704
LinkDB
All DBs
Position
15:853240..862585
Genome browser
AA seq
427 aa
AA seq
DB search
MADQETELLDYEEDEDAVEPVAGEATEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILRSI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPTVKVGVFFGGLNITKDEETLKNNCPHIVVGTPGRVLALV
RNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCK
KFMQDPMEVYVDDEAKLTLNGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIDL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcaagagactgagcttctggactatgaagaggacgaggatgcggtagagcca
gtggctggggaggccaccgaggctgcccctgccaaaaaagatgtcaagggtacctatgtg
tccattcactcttcgggttttagggatttcttactcaagccagagatcttgcgatctatt
gttgactgcggctttgagcatccctcagaagtgcaacacgaatgcatccctcaagctgta
ttgggtatggatatccttggacaagcaaagtctggcatggggaaaacagcagtgtttgtg
ttggcaactctacagcagattgaaccagttgatggccaggtgtctgtccttgtaatgtgt
cacactcgtgagttggcataccaaattgccaaggaatatgaaaggtttagcaagtatatg
cccactgtcaaggttggagtgttctttgggggcctgaatatcacaaaggatgaggaaacg
ctgaagaacaattgtcctcatattgtcgttggcacaccaggtcgtgtccttgctctagtc
cgtaataagaagcttaatctgcgtcacctcaagcattttgtcttggacgagtgcgataag
atgcttgaacaactagacatgaggcgtgatgtacaagaaatcttccgcaacactccacat
gagaagcaagtgatgatgttcagcgccacattgagcaaggatattcgtccagtttgcaag
aaatttatgcaagatcctatggaggtttatgttgatgatgaagcaaagttaacccttaat
ggtctgcagcagcattatgtcaagatcaaggagaatgaaaagaacaggaaattgtttgaa
ttgcttgatgcccttgaatttaaccaggttgtgatatttgtgaagtcggtgcagagatgt
atggcattagcacaattgctggtggaacaaaatttcccagccattgctattcaccgtgct
atgcagcaggaggagagactcagtcgttatcagcaattcaaagatttccaaaagcgtatt
ctagtggccacaaaccttttcggtcgtggaatggatatcgagcgagtcaacattgtcttc
aattacgacatgccagaggacagtgacacatatcttcacagagtggcgagagctggaaga
tttggtaccaaaggtttggcagtgacatttgtcagtgaagaaagtgacgcaaagaccttg
aatgaagttcaggaacgatttgatgtcaacattacagagctacctgatgaaattgatctc
tcgtcatatattgaaggacgctaa
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