Procambarus clarkii (red swamp crayfish): 123759429
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Entry
123759429 CDS
T07930
Symbol
HDAC6
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein HDAC6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcla01009
]
123759429 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123759429 (HDAC6)
04131 Membrane trafficking [BR:
pcla04131
]
123759429 (HDAC6)
03036 Chromosome and associated proteins [BR:
pcla03036
]
123759429 (HDAC6)
Enzymes [BR:
pcla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123759429 (HDAC6)
Protein phosphatases and associated proteins [BR:
pcla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123759429 (HDAC6)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
123759429 (HDAC6)
Membrane trafficking [BR:
pcla04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123759429 (HDAC6)
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
123759429 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
123759429
NCBI-ProteinID:
XP_069185073
LinkDB
All DBs
Position
22:complement(47224150..47275646)
Genome browser
AA seq
1918 aa
AA seq
DB search
MGDKKNSLPPLRKNSKKGQKPQTQGAGGVEGGNGELGEAGQTSKNRKLAAIRPRISIEEL
RNVFKRQASLSQEGGDPIFDPMAKAQEAMKMVRGKTGVVYDESMTKHCCLWDEKNPECPE
RLLCALDRCRELGLLSRCEHLVPRAATEEEVLKMHSPTHLALLWSTKGETDKSKLEELSS
HFDSIYLHPSTYETSLLAAGCAIDLVDAVASGRLQNGFAIVRPPGHHAMESEMCGFCYIN
NAALAARHALEKHGLSRILIVDWDIHHGQASQYAFYSDPRVLYFSIHRYENGSFWPHLRE
SNYNYIGEGAGLGFNFNVPLNKTGMRNEDYLAIFHQILLPVAYEFSPDLIIVSAGYDGAI
GCSEFAPEMVLISSGFDSALGDGKGEMEVSPGFYAHLTSSLMTLAQGRVAVIFEGGYCLD
SLAEGTAMTLSALLGDSCPVLLDPIMEPSPSLRESLLNLIYVQRAYWKCFQYQGSFSTRE
ESSESIKDRHTPSLTFFGQDVRPLTFQTRDIHNEQSSELLERIRLKLTQLKQKERTKPVP
KNRLCLVYDEEMSNHKSLSELEHPERPERTKKIWEYLKRYGIIERASILQSRRATREEVT
LVHTTDHVDFMFNMGSLSDEELKSLQDKYKSIYFHSMSNDAALLAVGSLLQVVDSVCSGM
TTGGIGVVRPPGHHAERNHPYGFCFYNNVAVAAKYALKQYGYQRVLILDWDVHHGNGIQH
SFESNPQVLYISIHRYDHGLFFPSSEDANYDQVGTGAGEGYNVNIPWNKSGMGDAEYISV
MLQVVLPIAYQYDPQLVLISAGFDAARGDPLGGCHVTPECYGHMTHLLSSLAGGKIVMAL
EGGYNLNTISYCMTMCAKALLGDPLPMLDASLVPNKGAVQTINDVIKTHSKYWSALSFQV
DLPLEDVLCQGFGGGAQAVESGASGSEASSSSTTSPVSTPSTSTPPFITAPSSPEKTKEK
ILCDGAASILVGFNETETKSHSEKMEVNSSPQVSVRSRTADKENLSVDRKKNGIKNAKGS
DINLNAVKAPSQTKINQSSASRQSKKPSGRSGKQEADSVRQKISRTPTRSRRSLGEGALS
AAADSIDKIKRSTAIISNEEYCEISSGEYSASSGNIKAIIERCSELQLLETCTRLQPRPA
TEAEILAVHKEETLKNIPGGTRKGIYHPVIGDDILTAAGSTVELIQEIVLGKAQNGLAII
QSSGHLVSENNATPNTHLNNTAIGVRFALDNLGLSRVLIIDWDGQHEINTQHLFYGEPRV
LVFSMHLHSNQHPEENVAGETGELEDDSYNFNVKLNCPIFRSEDYYSVFHQLLLPVAYEF
SPELVIISAGYELSLHSGHFHPVIYSHLTGLLMPLAQGKIAVIIEVGRCKNPLAEGVAAT
LRVLKDEPSEPMAFPTSDYSSEAKQAIINVISAQRAKWGSLMRHAQTSAVACKPKVNSSP
IIKPQEEHYFQLQRLGGNIPRPKHTVCLVYDDLMMEHFNYEDETYPERPERISSIYKCLQ
EFGIVGRCHQIKARIASESELETVHSSKHINFMSSLNAKKPQDLQYLQNKYDSIYLHRRT
NNTALLAAGSLVAVVDSVVSGESHRGVAVIRPPGHHAERNKPYGFCFYNNVALAAKHAIN
THGLQRILILDWDVHHGNGIQHMFESDPQVLYISIHRYDNGKFFPGTSAGNYDRVGTKEG
KGYNVNIPWNKGGMGDGDYMAAMVQVVLPIAYQFKPQLVLVSAGFDCAVGDPLGGCNVTP
ECFGHMTKMLTCLAEGRVIIALEGGYNLNSISYCMTMCVKALLGDPLLPLAQNLMPCTSA
IESLASVVDVHRKFWSALNFKDEALSAVGLTPTCPKLNVAHSPSKKSSEGTFTGLEDLTN
SFSRVKLEDTNTGTATATAALDETSVTLGSKESGRRHWCCGRSLWKFCSWQHEYLPVV
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaagaaaaattctctcccaccgctaaggaagaactcgaagaaaggccaaaag
ccacaaactcaaggtgctgggggagtggaaggaggcaatggcgaattaggtgaagctggg
cagacttcaaagaaccgtaaattagctgctattcgacctcgcatttcaattgaagaactg
aggaatgtgttcaaacggcaggcatctcttagtcaggaaggaggggaccctatcttcgac
cccatggctaaggctcaagaagctatgaaaatggtccggggaaagacgggcgtggtatac
gatgagagcatgaccaagcactgctgcctgtgggacgagaaaaacccggaatgtcctgag
aggctactatgtgctctggacaggtgcagagagctgggactgcttagtcggtgtgagcac
ttagtgcctcgtgctgcaacggaagaggaagtattgaagatgcattcccctacacacctt
gccctcctgtggagtaccaagggggagacggataaaagcaaacttgaggaactctcctct
cattttgattccatttaccttcatccatcaacctacgagacgtcgcttcttgctgctgga
tgtgctatagatctagtggatgctgtagcttcaggaagattacaaaatggctttgctatt
gtcagaccacctggccatcatgctatggagtcagaaatgtgtgggttctgctacataaac
aatgcagcgttggcagctcggcatgccttggagaagcatggattgtcacgcatcctcata
gttgactgggacattcaccatgggcaggcatcacaatatgcattttactcagatcccagg
gtgctctacttctctattcaccggtatgagaatgggagcttttggccacacctacgggaa
agcaactacaactatataggtgaaggagccggcctggggttcaacttcaatgttccactc
aacaaaactggcatgaggaatgaagactacttagccattttccatcaaattcttcttcct
gtggcttatgagttcagccctgacctcatcatagtatcagcaggatatgatggtgcaatt
ggatgttcggagtttgcaccagagatggttttgatctcatctggttttgattctgcgttg
ggtgatggtaagggagagatggaagtgtcaccaggtttctatgcccacctcacctctagt
ctaatgacactggctcagggaagagtggcagtaatttttgagggaggatattgcttggac
tccttagcagagggtacggcgatgacgctcagtgcgctacttggtgactcgtgtcctgta
ttgctggatccaatcatggaaccttctcccagcttgcgtgagtcacttctgaatcttatc
tacgttcaacgagcatattggaaatgtttccagtaccaggggtcattttcgacacgagaa
gagtccagcgagtccatcaaagacagacatacgccttctctaacattttttggacaagat
gtcagacctctcacatttcaaacaagagacatccataatgagcaatcatctgagcttttg
gagagaattaggttaaaactgactcagttaaaacaaaaagagaggactaaacctgtccca
aaaaataggctctgcttggtatatgatgaagaaatgagtaatcacaaaagcttgtctgag
cttgaacatccagaaagacctgaaaggacaaaaaaaatctgggaatacttgaagcgttat
ggcatcatagagagagcatcaattcttcagtcgcgacgagcaactcgggaagaagtgaca
cttgtacacaccacagaccacgtggacttcatgtttaacatgggatctttaagtgatgag
gaactaaagtctctgcaggataagtacaagtctatttacttccactctatgagcaatgat
gctgctctactggctgttggtagtcttctgcaggttgtggatagtgtgtgcagcggtatg
acaaccggtggcattggtgtggtgcgtccgcctgggcaccatgctgaaaggaaccatcct
tatggcttctgtttttataacaatgttgcagttgctgccaagtatgctctcaaacagtat
ggataccaacgtgtgttaatcttggactgggatgtccatcatggcaatggaatccagcat
tcttttgaatccaatccacaagtcctctacatatccatccaccgctacgaccatggtctc
ttctttccttcttctgaagatgccaactatgaccaagttggcacaggagccggggaagga
tacaatgtcaacatcccatggaacaagagtggtatgggagatgctgaatacatctcagtg
atgctgcaggtggtgttgcccattgcctaccagtatgatccccagctggtcctgatctca
gctggctttgatgctgctcgcggtgacccactgggaggatgccacgtcaccccggaatgt
tacggacatatgacacatcttctatcaagtctagctggtggtaaaattgtgatggcactt
gaagggggctataacctcaacaccatcagctactgtatgactatgtgtgctaaggcactc
ttaggtgacccactgcccatgctagacgcatcacttgtcccaaataaaggcgctgtgcag
accatcaatgacgttattaagactcactcaaaatattggtctgctctttccttccaggtt
gatctgccattagaggatgttctttgtcaaggatttggaggtggagcacaagcagttgaa
tctggggcgtcaggttcagaggcctcatcatcttccactacctctcctgtctcaactcca
tccacaagtacccctccatttatcactgctccttcttcaccagaaaagaccaaagagaag
attctatgtgatggtgcagcttctattcttgtggggtttaatgaaactgaaactaaatca
cattcagaaaaaatggaagtgaattcaagccctcaagtttctgtaagatcacgaactgcc
gataaagagaatctttcagttgatagaaagaagaatggtataaagaatgcaaaaggttct
gatataaatcttaatgctgttaaagcgccatcacagacaaaaattaatcagagttctgca
agtagacaatctaagaagccaagtggtagatcaggtaaacaagaagctgatagtgtaaga
caaaaaatatcacgaactcctacacgttccagaagatctttgggtgaaggagcgttgagt
gctgctgcagacagcattgataagataaagcgttcaactgcaattatatccaatgaggag
tactgtgagattagcagtggggaatatagtgcaagttccggaaatattaaagcaatcatt
gaacgatgtagtgagctgcaattgttagagacgtgcactagacttcagccaagacctgcc
actgaggcagagatattggctgttcacaaagaggaaacacttaagaacatcccaggaggt
acaagaaagggcatctatcatcctgtaattggagatgatatcttgactgctgctggaagt
acagtggaattgattcaagaaattgtattaggcaaagctcaaaatggtttggctattata
cagtcttcaggtcatttggtgtcagaaaataatgcaactcccaacacccatttgaataac
actgctattggagttcgctttgcattagataacttgggactcagtcgggtgctaataatt
gattgggatggccagcatgagattaatacccagcacctcttctacggtgagccacgagtc
ttggtgttttctatgcacctacacagcaatcaacacccagaggaaaatgtagcgggtgaa
acaggagaactagaagatgacagttataattttaatgtcaagctaaactgtcccatcttt
cggagtgaagattattattcagtctttcatcagctgcttctaccagtagcatatgaattt
tctccagaattagtcattatctcagctggatatgaactatcgctacactctggacatttt
catccggtaatttattcacatctaacaggtttgctgatgccattagcacagggcaagatt
gcagtgataatagaggttggaagatgcaaaaatcctttggcagaaggagtggccgccaca
ttacgtgtactcaaggatgagccttctgaacccatggcatttccaactagcgattactcc
tcagaagcaaagcaagcaattattaatgtaataagtgcacagagagctaaatggggcagc
ttaatgcgtcatgctcaaacttcagctgttgcatgtaaaccaaaagtgaactcttctccc
atcatcaagccacaggaagagcactacttccaactccaaagactgggtgggaatatccca
aggccaaagcatacagtatgtcttgtttatgacgacttaatgatggaacacttcaactat
gaagacgagacatatcctgagaggccagagagaataagctcaatttataagtgcttgcaa
gagtttggcattgttggccgatgtcatcagatcaaggcaaggatagcatcagaaagtgaa
ctggaaactgtacatagttcgaaacacatcaacttcatgtcatccctgaatgctaagaaa
cctcaagatcttcagtacttgcagaataaatatgattccatctatcttcatcgccgcacc
aacaacactgctcttttggccgctggctctctagttgcggttgtggacagtgttgtatca
ggcgaaagtcatcgtggtgttgcagtgatccgtccccctggccaccatgctgagaggaat
aagccttatggcttttgcttctacaacaatgtggctcttgctgccaaacatgccatcaac
actcatggattgcagaggatattaatcttggactgggatgtccatcatggcaatgggatc
cagcatatgtttgagtcagacccacaggtcctctatatatcaatccatcgctatgataac
ggaaagttcttccccggcacttccgccggtaactacgatagggtgggcaccaaggaaggg
aaaggatataacgtgaacattccatggaataagggagggatgggtgatggtgactacatg
gcagccatggtccaggttgtgcttcctattgcttaccagttcaagccccagctggtgctg
gtctcagctggatttgattgtgctgttggagatcctcttggtggatgcaatgtgacacca
gagtgttttggacacatgacgaagatgttgacgtgcctggcagagggtcgagtcattatc
gccctggaaggtggttacaacctgaacagcatcagttactgcatgaccatgtgtgtcaag
gctctcctgggagaccctcttctccctctagctcaaaatttaatgccttgtactagtgct
atagaatcactggccagtgttgttgatgtacataggaagttttggtctgcactaaatttc
aaggatgaagctttatcggctgtgggtctgactcctacctgcccaaaactgaatgtcgca
cattcaccctcaaagaagagttccgaaggaacctttacaggtttagaagacttgactaac
agcttcagccgagtaaagctagaagatacgaacacaggcacagccacagcaacagcagcc
ttagatgaaacaagtgtaacactagggagtaaggaatcaggaagaagacattggtgctgt
gggaggagcttatggaagttctgcagttggcaacatgagtaccttcctgttgtctga
DBGET
integrated database retrieval system
