Procambarus clarkii (red swamp crayfish): 123760044
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Entry
123760044 CDS
T07930
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123760044
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcla00536
]
123760044
Glycosaminoglycan binding proteins [BR:
pcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123760044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
123760044
NCBI-ProteinID:
XP_045601395
LinkDB
All DBs
Position
16:24440671..24478157
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AA seq
1629 aa
AA seq
DB search
MTGVGRAGQGRISAVGARAQYRVVGCRGHTGPTGQTAHPQQLPPTPRCPRDAAVAAPRPT
MWRLQAPAWRPPPLPSLLLLLLLLASVTPWAAADPKPKPQEDYYDGYGGGENYEDYEEYP
PYEDYNYEEEPYPTDRERGPVTTEAPPAAPYDPYAATEAPPYDPYGPYDPYTTEAPYDSY
DPYDYTEPPTTTTTSTTTTTTTTTTTPPPTTTTTTTTTTPPPPPPPTVAYEGEATRVRRP
GRRRKGERRGQVGRDREEEPPPEIVGPTPPDTGYGASTTGAEGGSGPPGDRGPTGTPGDP
GIPGQPGPPGPMPDIAPWLTQLSQSQGGEKGPIQPDPFSYLQAQVGPVGPRGSPGSPGPS
GPQGFQGTRGEPGDTGPIGSAGPPGPRGMPGIPGKDGENGEDGAPGPPGSVGPPGPRGLP
GMPGLPGVKGHRGFSGLDGAKGEQGQMGDKGAAGPGGPPGPVGPMGSAGPRGERGREGPP
GPPGLRGIDGIGGPPGPPGPPGKSGPPGFPGSAGAKGDQGVQGSKGSQGLQGPRGEAGKP
GTPGEPGPQGGPGKDGMPGEKGAPGAQGDSGPPGFPGARGPPGLPGSPGMPGNKGERGLA
GERGFKGEGGMKGEGGTPGPRGLPGAPGSSGKRGKRGIRGPPGGVGPQGERGPTGGRGLP
GADGPPGPKGQSGDPGPTGTNGQKGREGNPGPPGLPGRQGLRGPTGLSGPSGKTGRPGDR
GPPGADGKPGDQGPQGIQGLPGPMGPPGPLGPIGEPGKDGNPGEIGATGPRGDPGKDGSQ
GPPGVAGPTGSPGERGPPGSPGARGFQGLPGAPGISGANGKDGEAGLQGPRGLPGGAGLR
GQRGFPGERGAQGPPGEAGKRGESGQSGPDGPAGPAGPPGQKGHSGPSGLVGLPGGRGPP
GLPGEKGERGSLGRVGPEGPPGRQGDQGPQGIMGPIGPPGEPAEKGDPGPPGPPGEAGAN
GMTGDRGPQGEQGLQGFPGPLGPPGTSGPKGQRGLPGQKGTQGNPGLVGQPGETGPQGLA
GLTGAKGQRGELGQRGEPGLMGPPGRPGNAGTPGTPGDQGPPGSSGNPGIKGTPGDTGRP
GLPGPTGQPGAPGAEGPKGEAGPEGRSGAVGQPGPVGPSGERGLPGLPGPPGPPGLRGKN
GERGEQGPEGKRGDEGPIGSPGLPGSVGPIGPTGDNGAPGADGKPGPPGISGRTGDKGPP
GSPGQQGGPGPTGLPGPPGPAGPIGPTGERGDRGEVGPQGVEGSPGPRGKSGAPGTQGET
GETGAAGPKGAKGHRGLIGLQGLPGPQGPSGDKGVPGVAGPPGPSGEPGPKGPPGRDGGI
GPQGIMGPPGPRGPSGEEGKFGPPGPPGPSGPPGPPGESMGYDAAALAALLGQGQAKGPD
PLQGDDSELPARLFGKEITDDERRDLITKAYEQLKTSFKKFLRPEGTKDSPAKTCRDLAY
THPELPNGEYWVDPNEGDTKDAIVVFCDMEKKATCVLPQPEITQEFTWRGQPRGIVWLGE
DIQPGYEFTYKADSNQMQFLQLLSAEATQQLTYHCKNSVAVFDARRRNLRNALQIMTVSD
TELKARGNRKFKYRVIEDGCKTRLPTWASTIIEFRTEKPQRLPFVDIGVRDIGEPNQAFK
IELGPVCYS
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgacgggtgtagggcgtgcagggcaggggcgcatcagtgcggtgggggcccgggctcag
tacagagtagttggctgccgcgggcacacgggtccgacgggacagacggcacacccccag
cagctgcccccgacgccgcgctgcccaagggacgccgccgtcgccgccccgcgccccacc
atgtggcggctccaagcgcccgcctggcggcctccaccgctgccctccctactcctgctg
ctgctcctgctcgcctctgttacgccatgggccgcagcagaccctaagcccaaaccccaa
gaagactactacgacggatatggcggcggtgaaaattacgaagattacgaagaatatccc
ccctatgaagattacaattatgaagaagagccatatcccactgaccgtgaacgtggtcca
gtgaccactgaagcccctccggctgctccatatgacccatatgctgccacagaggcccca
ccctacgacccatatggtccctatgacccatacacaacagaggccccctacgactcttat
gatccttatgattacactgaacctcccaccactaccaccaccagcaccactaccaccaca
accacaaccacaaccactcctccacctactactaccacaaccacaaccaccaccacccca
cccccaccgccacctccgacagttgcttatgaaggggaggctacaagagtgagaagacca
ggtaggcgtcggaagggggagcgcagaggacaggttggacgtgacagggaagaagaacct
cctccggaaattgtcggaccaacacctcctgataccggctacggcgcttccaccaccggc
gcggagggcggctctgggcctccaggagaccggggtcccacgggcaccccaggcgacccc
ggaattccaggtcagcctggaccaccaggacccatgccagatattgcgccatggttgacg
cagctttctcagtcccaaggcggagaaaaaggacccattcagccagacccattcagttat
ctgcaagctcaagtggggcctgtcggccctaggggctccccaggatcaccaggtccctct
ggccctcaaggtttccaggggacacgaggtgagcctggtgacacaggccctattggttca
gcaggccctccaggtcctcgaggaatgccaggaatcccaggaaaagatggtgagaatgga
gaagatggagcaccaggtcccccaggttcagtgggacctcctggtccccgcggtctacct
ggtatgccaggtctacctggcgtgaagggacaccgtggcttttctggtctggacggagct
aagggagagcaaggtcagatgggtgacaagggtgctgcaggtcctgggggtccacctgga
cccgttggtcctatgggctcggctggtccccgtggtgagcgaggtagggagggtccacca
ggtcctcctggcttgagaggtattgatggcattggaggtcctcctggccctccaggtcca
cctggcaagtctggcccccctggcttccctggcagtgcaggagctaagggagaccaaggt
gtacagggatctaagggttctcaaggtctccagggcccaagaggtgaggcaggaaagccc
ggtactcctggagagcctggcccccagggaggacctggcaaggatggcatgcctggagag
aagggcgctcctggtgcacagggagattctggccctccaggattcccaggtgctcgtggg
cccccaggtctacctggcagccctggcatgcctggcaacaagggtgagaggggtttggct
ggagaacgaggcttcaaaggagaaggaggaatgaagggagaaggaggaacccctggccct
cgtgggctgccaggtgctcctggatcttcaggtaaacgcggcaagagaggtattcgaggt
cctccaggaggagtgggccctcagggcgaacgtggaccaacaggaggccgtggtctccca
ggtgctgatggacctccaggccctaagggtcagagtggtgacccaggccccactggcacc
aatggtcagaaaggtcgtgaaggcaaccctggtcctccaggcctaccaggtcgccaaggc
ctgcgagggcccactggtctatctggtccctctggcaaaactggtcggcctggagaccga
ggtccacctggagctgatggcaaacctggtgaccaaggacctcaaggaattcagggtctt
cccggacctatgggacctcctggtccacttggaccaatcggtgagcctggcaaagacggc
aatcctggtgagattggtgcaacaggccccagaggtgacccaggaaaggatggttctcag
gggcccccaggcgtggcagggccaacaggttctcctggcgagcgaggtccccctggttct
ccaggtgctcgtggcttccaaggtcttcctggtgctcctggaatttctggtgctaatgga
aaggacggggaggctggtctgcagggtcctcggggtctgcctggtggtgctggtcttcgt
ggtcagcgaggctttcccggagaacgaggtgctcaaggtcccccaggtgaagccggcaaa
cgtggagagagtggccaaagtggtcctgatggacctgcaggtcctgctggtccaccagga
caaaaaggtcattctggtccctctggtctcgttggtcttcctggtggtcgagggcctcct
ggtcttccaggagagaaaggtgaacgtggatcattaggacgtgttggacccgagggccca
ccaggtcgtcaaggagatcaaggtcctcagggtataatgggtccaattgggcctccagga
gaacctgcagagaagggagatccaggtccaccaggtcctcctggtgaagctggtgccaac
ggcatgactggagatcgaggtccccagggtgaacagggtcttcagggtttcccaggacct
cttgggccacctggaacttcaggtcccaaaggacaacgtggtctacctggtcagaagggc
actcaaggtaaccctggcttggtaggacagcctggtgaaactggacctcagggtctagct
ggactgacgggtgcaaagggacagcgaggtgaactaggacaacgaggagagcctggtcta
atgggtccccctggacgacctggcaatgctggcacgcctggtaccccaggagatcaagga
cctccaggttcaagtggtaaccctggaatcaagggaacccctggtgacactggccgacct
ggtctgccaggaccaactggccagcccggtgcccctggagctgagggacctaagggtgaa
gctggtcctgaaggtcgctctggagccgttggtcagcctggtcctgttggaccatcagga
gaacgtggattgcctggtcttcctggtccacctggtcctcctggacttcgagggaaaaat
ggcgaacgcggagaacaaggtccagaaggcaaacgtggtgatgaaggtcccattggttct
cctgggttgcctgggtctgtcggccctattggtcccacaggtgacaatggtgcccctggt
gctgacggcaaacctgggcctccgggtatttctggtcgtacaggagacaagggcccacca
ggttcaccaggacaacagggcggccctggacccactggtttacctggtccccctgggcct
gctggacccattggcccaactggagagcgtggagaccgcggagaagttggaccacaaggt
gttgagggtagtccaggtccaagaggaaagtctggtgcaccaggaacacaaggagaaact
ggagaaactggagcagcaggtcctaagggtgccaagggacacagaggtctcattggtctt
caaggtcttcctgggcctcaaggtccctcgggtgacaaaggtgtacctggtgttgctggt
ccacccggtccatctggtgagcctggtcctaagggcccacctggccgtgatggaggaatt
ggtcctcaaggtattatgggtcctcctggtccccgtggtcctagcggagaagaaggtaaa
tttggtcctcctggcccacctggtccttctggtccccctggtccacctggtgaatctatg
ggttatgatgcagcagcactggcagctctcctagggcagggtcaggctaagggaccagat
cctcttcagggtgatgattccgaactgccagcacgtctctttggcaaagaaatcacggac
gatgagcgtcgcgatctcataaccaaggcatatgagcaactcaagacatctttcaagaag
ttcctcagaccagaaggcacaaaagactccccagcaaagacatgccgtgatctggcttac
actcatccggaacttcccaatggggaatactgggtggaccccaacgagggagatacgaag
gatgccatcgtggtattctgtgacatggagaagaaggcaacatgtgtcctgccgcagcct
gagatcacccaagagttcacttggcgtggacagcctcggggcattgtctggcttggagag
gacattcaaccaggttatgagttcacatacaaggcagacagcaaccagatgcagttcctg
cagctgttgtcagcagaggcgacccagcagctcacctaccattgcaagaactctgttgcc
gtattcgatgccaggaggaggaaccttcgcaatgccttgcagatcatgactgtctcggac
acagagcttaaagccagagggaataggaagtttaaatacagagttatagaagatggatgt
aagacaagacttcccacctgggcctccaccattatagagttccgcacagagaaaccacag
cggttaccattcgtggacattggtgtccgggatattggtgaacccaaccaagcatttaaa
atcgagctgggacccgtgtgctactcgtag
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