Procambarus clarkii (red swamp crayfish): 123760404
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Entry
123760404 CDS
T07930
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 15 isoform X1
KO
K14323
protein CASC3
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03013
Nucleocytoplasmic transport
pcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123760404
03015 mRNA surveillance pathway
123760404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123760404
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123760404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
123760404
NCBI-ProteinID:
XP_069179519
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Position
1:24804995..24840424
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AA seq
523 aa
AA seq
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MADRRRRRKLDTGEDSDESEDEQTGPRKPLTGSDGGECETANEEELGEEEEEEEDELIIM
PDGLVLGKDNKPLDDDEDRKNPQYIPKKGTFYEHDDRTAAEDDVEKPVEEPVVKKEVGKK
KVWKEDDKWNHDKFNEFDQSPKSREEIMAIYGYDIRNEGPPKAHCRRRYGRGPNKYTRNW
KDLDAYSKPVRGSIRGGPGRGGPRSLHGSRKTLDNDEEFPVLNSPQYKKHEGDKYNDLNK
FESPVTRSEVPGAIVDNLHTGDNENYKPEQTAPLASPQQQLPPQYHQQQQQQQQQQQQQQ
QQQQLHKISGFSPQPQDVCADGYGGRGRGYRGSGRGYNRGRGYNREREQHRYNEDSWGQY
YQDNCPSGRGNYRGGHQQRLPQPHTPHTPRDIEEITAMLKNISISSQNRKEPFRNKNRGG
GGNVDNRRNTMPPRLQESAAAAANMQGRGNRGGNASPDGDSSSSRPKRYSSQRQRSIPGQ
QVSPFPPQHGYMDPSVDAGLQESMVGAECMGMQSIAASRVQWD
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaggcgacggagaaaacttgacacaggtgaagattctgacgagtccgag
gatgagcagacaggaccacggaagccccttactggaagtgatggaggtgagtgtgaaact
gctaatgaggaagagcttggggaagaggaggaggaggaagaggatgagctcattataatg
ccagatggtcttgtattagggaaggacaacaagccattagatgacgatgaggatcggaaa
aaccctcagtatatccccaagaaaggaactttttatgagcatgatgaccggaccgctgcc
gaagacgatgtagagaaaccggttgaagaaccagtcgttaaaaaggaagttggtaagaag
aaagtttggaaagaggatgataagtggaaccatgacaaatttaatgagtttgaccaatct
cccaagtcccgggaagagataatggctatatatggttatgatatacgtaatgaaggtcct
ccaaaagctcattgtagaaggcgttatggtcgtggaccaaacaaatatacacgcaattgg
aaggatttggatgcctactccaagcctgttcgtggttccatacgcggaggtcctggaaga
ggtgggcccaggtctttgcatggcagccgaaaaactctagacaacgatgaagaattcccg
gtattgaattctccacaatacaaaaaacacgaaggtgataaatataatgacctcaacaag
tttgaatctcctgtgacaagatcagaagtgccaggagcaattgttgacaatttgcataca
ggtgataatgaaaattataaaccagaacaaacggcaccattagcctcaccacagcagcag
ttaccaccgcagtatcatcagcagcagcagcagcagcaacaacagcagcagcagcaacaa
caacagcagcagctacacaagatctcaggttttagtccacaaccccaagatgtatgtgct
gatggctatggtggacgtggcagaggttacagaggttctggtagaggttacaatcgtggc
agaggctataatcgagaacgtgaacaacatagatataatgaggacagttggggccagtat
taccaagacaattgtcccagtggccgtggtaattatagaggcggacaccagcagcgttta
ccccaaccacatactccccatacacccagagatatagaagaaataacagcaatgttaaag
aacatcagtatcagttcacaaaatagaaaagagccgttcaggaacaaaaatcgtggtgga
ggtggaaatgtggataacagacgcaacacaatgcctccacgactgcaggaatcggccgct
gctgcagccaacatgcaaggtcggggaaacagaggtggtaatgcatctcctgacggagat
agctcatcttctagaccaaaaagatactcgtctcaaagacaacgctccattcctgggcag
caagtttcacccttcccaccgcaacatggttatatggatccatctgtagatgcaggactc
caggagtccatggttggtgcagagtgcatgggcatgcagtctattgctgcttcaagagtc
cagtgggattag
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