Procambarus clarkii (red swamp crayfish): 123762046
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Entry
123762046 CDS
T07930
Symbol
spel1
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123762046 (spel1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcla03400
]
123762046 (spel1)
DNA repair and recombination proteins [BR:
pcla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123762046 (spel1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Snf7
Fcf2
DUF2884
Motif
Other DBs
NCBI-GeneID:
123762046
NCBI-ProteinID:
XP_045604206
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Position
34:complement(36563678..36579028)
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AA seq
927 aa
AA seq
DB search
MATLQPKEQLALDGASEQGFLAFHRGLPEKPNTTVRVFDRGEYYTVHGQDALLAARDLFR
TNSVVKHLGSGNKKLESVVLSRLNFESFVRDLLLVKHYRVEVYKQKSSAKSDWEVEYKAS
PGNLSQFEEVLFGANNELTVTTGVMAVKLATENGQRVVGVGYVDVSGRLMTVSEFNDNDT
FSNLEALVVQLGPRECLIPLGDMGPDGTKLKQVLSRNPLLVTERKKAEFNNKDATQDLNR
LLHTKGGDASTTSARPEMDRTSAIAALAAVIKYLELLGDESNFGQFTMSLYDLSQYMRLD
SAAVRALHVEPLGSGELSGAAAKTHTILGLLDKCRTPLGHRLLLQWLRQPLVDINKIEER
QDLVEAVVSSVELRHSLGEEHLRRIPDLNRLARKLARKAATLQDCYKFYQCVDRLPNLCE
AIAKYEGPHIASLAAVFTTPLQELLSDLSKFQEMIETTVDMEQAGQGDYVIKPDFDETLG
DLRETMNGLETDIQNQLKKVANDLGLDAGKSVKLESNAQLGYFFRVTLKEEKVLRNNRNY
RMIDTNKAGVRFRNGALQDLNDQHMASREEYNEQQKTVVDEIMNIAAGYVEVIQNLGHVL
ATLDCIYALASAAVSAPIPYIRPKLLARGSGVLKLEGIRHPCLELQDDVSFIANDCNFDK
DNGMFHIITGPNMGGKSTYLRSVGAAVLMAQVGSFVACQEAEMSIVDSILARVGAGDCQL
KGVSTFMAEMLETASILRSASNESLIIIDELGRGTSTYDGFGLAWAISEHIAKEIGSFCL
FATHFHELTALSDEVETVKNFHVTATTAHGALTLLYQVQPGPCDRSFGIHVAELANFPAS
VIEYAKRKAGELEDDFGDDDDSEEAVKRRKSEKQEGEKIIEEYLERVSSLDTESMTEEEV
HKEVDAMRQEILARNNAYLSHLLNRET
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggccactctccagcccaaggaacagctcgccctcgatggggccagcgagcagggcttc
ctcgccttccaccgcggcctgcctgagaaaccaaacactacggtaagagtgttcgaccgt
ggggaatactacactgtgcatggccaggatgccctgctggctgcacgagacctcttccgc
accaattctgtggtcaaacacttgggttcaggcaacaagaagttggaatctgtagtgctg
agtcgactgaactttgagtcatttgtgcgggatcttttgctggtcaagcactacagagtg
gaagtgtataaacagaagagctcggcaaaaagtgactgggaggttgaatataaggcttct
ccgggtaacttgagtcagtttgaagaagtgctgtttggggctaacaatgagcttacagtt
acaacaggtgtcatggctgtcaagctagccactgaaaatggccagagagttgtgggagtt
gggtatgtggacgtgtcaggccggctaatgactgtgtcggagttcaatgacaatgacaca
ttcagtaacctggaggctctggtagtgcaactggggcctcgggagtgtcttattcctttg
ggggatatgggcccagatggcacaaagctcaagcaggtgttgtctcgaaatccattgctt
gttactgaaaggaagaaagcagagttcaacaataaagatgccactcaggacttaaaccgc
ctcttacatacaaagggtggagatgcgtcgactacttcggcacgtccagaaatggatcgt
actagtgccattgctgcgctggctgctgtcataaagtaccttgagctccttggggacgag
tcaaactttggccagtttacaatgtccttgtatgacctgagtcagtatatgcgactcgac
agtgcagcagttcgggcattgcacgtggaaccccttgggagtggggaactgtctggtgct
gctgctaaaacacacaccattcttggtcttctggataagtgtcgcactccgcttggtcat
cgcctgctcttacagtggcttagacagccattggtagacatcaacaagattgaagaacga
caggacttggttgaggccgtagtttcatcagtagagctgcgtcacagtcttggggaagag
catcttcgtcgtattcctgacctgaatcgcctggctcggaaactggcacgcaaagcggcc
acactccaagactgttacaaattttatcagtgtgttgatcgattgccaaatttgtgtgaa
gctatagccaagtatgaagggcctcacatcgcctccctggcagcagtcttcacaactcct
cttcaggagctgctgtcagacctgtcaaagtttcaagaaatgatagagactactgtagat
atggaacaagccggtcagggagactatgtcatcaagccagattttgacgagacactagga
gacctgcgagaaacgatgaatggcttggaaacagatattcaaaatcagttgaaaaaggtg
gcaaatgatcttggtcttgatgccggaaaaagtgtcaaattggagtccaatgctcagctt
ggctactttttcagagtcacgcttaaggaagaaaaagtgctgcgtaacaataggaactac
cggatgattgacaccaacaaagctggagtacgattcagaaacggtgcccttcaagatctg
aatgatcagcacatggcttcacgagaggagtacaatgaacagcaaaaaactgttgttgac
gagatcatgaatattgcagctggttatgttgaagtgatacaaaatctaggtcatgtgctg
gctactttagactgtatttatgccttggcctctgctgcggtatctgcacccattccttac
atacgacccaaactcctggctaggggatctggtgtactaaagctggaaggtattcgtcat
ccatgtttagaactacaagatgatgtctcatttatagcaaatgactgtaattttgataaa
gataatggaatgttccacattatcaccggcccaaacatgggaggtaagagtacttacctg
agatcagttggagcagctgtgttgatggctcaagtcggctcatttgttgcctgtcaagag
gcagaaatgtctattgttgatagtatcctggctcgtgtgggtgctggagactgccagttg
aaaggggtttcaactttcatggcagaaatgttagagaccgcttccattcttcggtctgca
agcaacgagtccctcatcattattgatgaactcggccgtggaacttcaacatacgatggg
tttggattagcatgggcgatatcggagcatatagctaaggagattgggtcattttgcttg
tttgcaacacattttcatgaactgacagcacttagtgatgaggtggagacagtgaagaac
ttccacgttacggctaccaccgctcatggtgctcttactcttctctatcaggtgcagcca
gggccttgtgatcgcagttttggtatccatgtagcagaattggccaatttccctgctagt
gtaattgagtatgccaagaggaaagctggagaactggaagatgattttggtgatgatgat
gattctgaggaagctgtcaaaaggaggaagtcagagaagcaggagggtgagaagataata
gaggaataccttgaaagggtatcttcacttgacactgaaagcatgactgaagaagaggta
cataaagaagtcgacgcaatgcggcaggaaattttggctcgtaacaatgcatacctgtcc
cacctcttgaacagggagacttga
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