Procambarus clarkii (red swamp crayfish): 123762496
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Entry
123762496 CDS
T07930
Symbol
Rrp6
Name
(RefSeq) exosome complex component 10 homolog
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123762496 (Rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123762496 (Rrp6)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123762496 (Rrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
YnaM
Motif
Other DBs
NCBI-GeneID:
123762496
NCBI-ProteinID:
XP_069188614
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All DBs
Position
27:complement(28253974..28287898)
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AA seq
849 aa
AA seq
DB search
MDSNMTDGLSPYTGNRSLDDYVKSIMNSVRGCQKISSELQGWHHYRDYAGVQRTMEQVNS
SITSLISSIFSHQDIKLGLSHHKLIDQFDMIREGNDALLERINSDVDEASGLKKNPDAEL
LDPVVKKVQSPATNVPGGKNVVLLAARNVQKPQLFFAEKINNSAKEPFIPIIKEKPNSMK
PLSILLCLDNNGQEFYSHPYEYELQHWAPAQSQLQPVDPILPKPMAETPLVMVDTEEELN
NLVRDLSACTEFAVDLEHHSFRSYMGLTCLMQISTRDKDYIVDPLKLRGKLTILNEVFTN
PKITKVLHGGDHDILWLQRDCGVYVVNLFDTHQAAIVLEYPHRSLAALLARFCQVEANKV
FQRADWRIRPLPSDFINYARQDSHYLLYIYDVMKNELISWGNQLNNLIFAVYTRSAEICM
RRYEKPFVGPESHMELYRRSRKAFNSRQMYALRELYLWRDRVAREQDESPEYVLPKHMLL
QITEVIPKEMQGVLACCNPIPPLVKTELLTIHTIIREALVQPLIDIKNTAIEGQLPIGTT
QSTYDSNANFICKHDLSQCEENPTDLPTLLNPRETLLGDLFKQNRITAASLKEKSQLFGC
TTNQLLCKKPEHSKRTTKFMSPHERYTAYIKMKPLIDGEKKKKEGQSADTDRVNKVREHF
MSLTNNTVDTESEMETNHRVEEERTTNESVSMQLQEQNSQQQLEDTSQQEKTESKTKKKC
PPKSFILSEEIQEEKNKKSLKRKSDGGEESPPKVQKPNEVEQTEKANEKEDGELSGDSSE
KNTIGGEKSSEAFDYEAADYSLFQKAQRKAQGSSQKIKEKFKGKNQKGRGGKSSMKSFTW
GNAGHRGRR
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggattccaatatgacagatggcctcagtccttacacggggaaccggtcgttagacgat
tatgttaagagcattatgaatagtgttcgaggatgtcagaaaataagtagcgagcttcag
ggctggcatcattatcgggactatgcaggagttcagcgcacaatggaacaagtcaattcg
agcatcacatccttaattagcagcatcttcagtcatcaggatatcaagttgggattatct
catcacaagctgattgaccagtttgatatgatcagggaaggcaatgatgctcttcttgaa
aggattaattcagatgtagatgaagcttctgggctgaaaaagaatcctgatgcagaactg
cttgatcctgtagtaaagaaagtgcagagcccagctacgaatgtacctggtggaaagaat
gtcgttttattagcagctcgaaatgttcaaaagccacagctgttctttgcagaaaaaatc
aacaattctgcaaaggaaccatttattcccatcatcaaagagaaacccaattccatgaag
cctttatccattctattatgccttgacaataatggtcaagagttctattctcatccctat
gagtatgagctccaacactgggctccagcacaatctcagctccagcctgttgacccaatt
cttccaaagcccatggcagaaacacctttggtcatggtagatacagaagaggagttaaac
aatttagtcagagatcttagtgcttgtacagaatttgctgttgacttggagcatcactca
tttcggtcatatatgggacttacctgcctaatgcagatatccactagggataaggattat
attgtggatcctcttaaactcagaggtaaacttaccatcttaaatgaagtcttcacaaac
cccaaaattacaaaggtacttcatgggggtgaccatgacattttgtggctacagagagat
tgtggtgtgtatgtggttaatctcttcgacacccatcaggcagctattgttctcgagtac
ccacaccgttcattagctgctcttctcgcacgtttctgtcaagttgaagcaaacaaagtt
tttcagagggcagactggagaataaggcctcttcctagtgacttcattaattatgcaagg
caagactcgcattatttgttgtatatatatgatgtcatgaaaaatgaacttatttcatgg
ggtaaccaactcaacaatttgatttttgctgtttatacccgctctgctgaaatctgtatg
aggagatatgaaaagccatttgttgggccagagagtcacatggaattatatcgtcgcagt
cgtaaagcttttaattcaagacagatgtatgcattgcgagagctgtatctgtggcgtgac
agggttgcccgtgagcaagacgaaagcccagagtatgtgctcccgaaacatatgctgctg
cagataacagaggttatacccaaggagatgcagggggtgttggcatgttgtaacccgatc
cctccgctagtcaaaactgaattactcaccatacatacaatcatcagagaagctctggtg
caaccactcattgatataaaaaacactgctatagaaggacaacttcctataggaacaaca
caatctacatatgattctaatgcaaattttatttgcaagcatgacctttcacaatgtgaa
gaaaatccaactgaccttcctactctcctcaacccaagggaaactttgttgggagatctg
tttaaacaaaacagaatcacagctgcttcattgaaagaaaagtcacaactttttggatgc
actacgaatcagctgttatgcaagaaaccagaacattcaaaaagaactacgaaattcatg
agtccgcatgaaagatataccgcttacataaagatgaaaccacttatagatggagagaag
aagaagaaagagggacagtctgcagatactgaccgggtcaataaggtaagagaacacttc
atgtcattgacgaataatacagttgatacggaatctgaaatggaaaccaaccacagagtt
gaagaagagaggacaactaatgaaagtgtgtccatgcaattacaagaacaaaactctcaa
cagcagttagaggacacttcacagcaagaaaagactgaaagtaaaacaaagaaaaaatgt
cctccaaagtcttttattcttagtgaagagattcaagaagaaaaaaataagaagtcatta
aaaagaaaatcagatggtggtgaagaatctccaccaaaagtgcagaagcctaacgaagtt
gaacaaactgagaaagctaatgaaaaggaagacggagagttgtcaggtgatagttctgaa
aaaaatactattggtggagaaaagtcttctgaagcttttgattatgaggctgcagattac
agtttgttccaaaaggcacaaagaaaagcacaaggctcttcacagaaaatcaaagagaag
ttcaaaggaaagaatcagaaaggacgaggtgggaagtcaagtatgaagagctttacttgg
ggcaatgctggtcacagaggtcgtcgatag
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