Procambarus clarkii (red swamp crayfish): 123762672
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Entry
123762672 CDS
T07930
Symbol
Brr2
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123762672 (Brr2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123762672 (Brr2)
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123762672 (Brr2)
Spliceosome [BR:
pcla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123762672 (Brr2)
Complex C
U5 SnRNP specific factors
123762672 (Brr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
HTH_61
AAA_19
DnaB_C
nSTAND3
PhoH
TcA_RBD
SWI2_SNF2
DrmE_N
Motif
Other DBs
NCBI-GeneID:
123762672
NCBI-ProteinID:
XP_045605287
LinkDB
All DBs
Position
27:12097982..12115930
Genome browser
AA seq
2133 aa
AA seq
DB search
MADQTARQLQYEYKANSNLVLQADVRLIERRSKDEATGEVMSLSGKLEGTRMGDRYQRTK
PQQPKEEQRKSKKQKREDTPSIAVKSMSILELDDMADIFYRPKSTDTKQTYEVILSFIQE
ALGDQPRDVLCGAADEVLAVLKNDKLKDRERKKETEELLGGLAEERFAVLVNLGKKITDF
GHETKAVASEAVLDETHGVNVQFEDSEEEEEDEVAGEVGDEEEDEGETEEAVVGSHAIHA
ENLTGGEQVGTKKERVLSPHDIGAHWLQRELNRFYNDPIQAQTKSSDVLEILKSAKDDRE
CENKLVLNLGYDKFEFIKILNKNRQMVLYCTLLASAQSESEKEDIRRVMLAEPNLKRILA
LLENEEEAMDVTKDGEEIGGTRPRRINTEAMEVDDKSGQVPGHREFIDLESLVFTTGSHY
NSNKKCHLPEGSTRQMKKGYDEIHVPALKPKPFAPDETLVPIANLPAYTQPAFDGFKNLN
RIQSKLNKAAMDSDENLLLCAPTGAGKTNVALLTILREVGKNTNPDGTINSEAFKIIYVA
PMRSLVTEMTQNFAKRLEPYGLKVNELTGDHQLTREQIMETQVIVCTPEKWDVITRRGGE
RSYTQLVRLIIFDEIHLLHDERGPVLEALVARTLRNAETTGDAVRLVGLSATLPNYEDVA
AFLRVNLKTGLFFFDNSFRPVPLAQQYIGITEKKAIKRYQVMNDILYEKVMEHAGKNQIL
IFVHSRKETAKSAKAILDMCLEKDTLGNFLREGSASTEVLRTEADQVKNNDLKGLLPYGF
AVHHAGMNRVDRNLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGTQVYDASKGRWV
ELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLMNQQLPIESQLINKLPDLLN
AEIVLGSVQSVREAVNWLGYTYLYVRMIRAGNLYAVQADNSDKYLQQHRANLIHSAALKL
EKSNLIKYDKKSGNFQVTELGRIASYFYVTCETMNVYNQQLKPTLSEIELFRVFSQSSEF
KNIMVREEEKLELKKLMERVPIPIKESVEEPSAKVNILLQAYISQLKLDGFALMSDMVYV
TQSAGRLMRAMFEIVLHRGWAQLADKTLNLCKMVDKRMWQSMSPLRQFRKIPEEAIRKLE
KKSVPWERLYDLGPNEIGELIRMPKGGKMIHKYIHQLPKLDLETHIQPITRQMLKVELTI
TPDFKWDEKIHGRSEAFWIMVEDVDAENILHHEYFLLKQKFAEDEHVVKFFVPVFEPLHP
HYFIRITSDKWLSAETQLPVSFRHLILPEKYPPPTELLDLQPLPITALRNPQYEALYKTL
NKFQQFNPIQTQVFNATYNSDDSVFIAAPTGSGKTLCAEFAILRTFSQDESARCVYVASK
DEIVESMYEHWQEKFSNLEKRVVLLTGETGADLKLLNRANIVVSTAEKWDVLSRRWKQRK
NVQNISLFIVDELQLMGGSDGPTLEVVCSRIRYIASKISRHIRIVALSSSLANARDVAQW
LGCSSNYTFNFHPNVRPLPLELHIQGFNNPHNASRIYAMAKPAYLAILKHSPRKPSMVFV
PSRKQSMITASDLLTFAAADKEPQRFLQVNPQEMAEFLPQIGDEMLRELVSQGVGYLHEG
LSARDRRMVERLFEAEAIQVVVVSRALCWAVTAPSHLVIITDTQSYNGRLHNYEDYPITD
TLQMVGRANRPNEDDEAKCVLMCHSSKKDYFKKFLYEPLPIESHLDHALHDHFNAEIVTR
TIENKQEAVDYVTWTFLYRRMTQNPNYYGLQGVSHRHLSDHLSDLVENTLHDLEESRCIT
IEDDMDTAPLNLGIIASYYYINYTTIELFNKSLNSKTKIRGLLEIISSAAEYENVPIRHG
EEDTLRRLVQKVPNKPEGKVTDPHTKTNLMLQAHLSRLTLSAELQQDTELVLGRALRLIQ
ACVDVLSSNGWLAPALSAMTLAQMVTQAMWSKDSYLKQLPHFTGEMIERCEAKDVTSVFD
ILELEDDDRNRLLQLSDAQMTDVARFCNRYPSINLDYEVIDSDSITSGSMVNVEVVLERE
DEPGPVIAPLFPHKREEGWWVIIGDPKPNSLISIKRLTLQQKAKVKLDFVAPSEGSYEYR
LYFMSDAYMGCDQEYKVPLRVREAESESESESD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagaccgcccggcagctgcagtatgagtataaagcgaactccaaccttgtc
ttgcaagcagatgtccggctcattgagcgtcgcagcaaagatgaggcaacaggtgaagtc
atgtccctctcgggaaagcttgagggaacacgaatgggggatcgatatcagcgcactaag
ccacaacaacccaaggaggaacaacgcaaatcaaagaagcagaagcgtgaagatacccca
tccattgcagtaaagagtatgagcattttggagcttgatgacatggcagacatattttat
cgtcctaagagcacagacacaaaacagacatatgaggttattttatcattcatccaagag
gccctaggagatcagcctcgtgatgtactttgtggtgctgctgatgaagttcttgcagtt
ttgaaaaatgacaaacttaaagatcgtgagcgcaagaaagaaactgaagaattgttaggt
ggtcttgctgaagaaaggtttgctgtgctggtgaatttggggaaaaaaattacagatttt
ggtcatgaaacaaaggcagttgcaagtgaagcagtcttagatgagactcatggtgtcaat
gtacagtttgaagattctgaagaggaggaagaagatgaagtagctggtgaggttggcgat
gaggaagaagatgaaggggaaaccgaagaagctgtagttgggtcacatgccattcatgct
gagaatcttacaggtggtgaacaggttggaacaaagaaagagagggtccttagtccacat
gacattggtgcccattggctccaaagagaactcaacagattttataatgatcctatacag
gctcagactaaatcaagtgatgtgcttgaaatcctaaaatcagccaaagatgatagagaa
tgtgaaaataaacttgttctgaatcttggttatgacaagtttgaattcattaaaattctt
aacaaaaaccgccaaatggttctttattgtacacttttggcatcagcacaatcagagtct
gaaaaggaagacattcgccgagttatgttagccgagccaaacctgaagcgaatactagcc
cttctagaaaatgaggaagaagctatggatgtaactaaagatggagaagaaataggagga
acacggccaaggagaataaacacagaagccatggaggtagatgataaatccggtcaggtc
ccaggacatagagaatttatagacttggagagccttgtgtttactactggatcacactac
aattctaacaagaagtgccaccttcctgaaggctcaactagacagatgaagaaagggtat
gatgaaattcatgtacctgccctaaagccaaaaccatttgctccagatgaaacattggtt
ccaattgctaacttacctgcttatactcagcctgcatttgacggcttcaagaatcttaat
cgcatccagagtaaattgaataaagcagccatggacagcgatgaaaatttactcctatgt
gcccctactggtgcaggtaaaacaaatgtggcactgctaaccattcttagggaagttggt
aaaaatactaacccagatggcaccattaattctgaggctttcaaaattatctatgtagcc
cctatgcgttctcttgttacagaaatgacacaaaactttgcaaaaagattggagccttat
gggcttaaggttaatgaactgactggagaccatcagttaacacgggagcagattatggag
actcaagttattgtgtgtactcctgaaaaatgggatgtcattactagacgtggtggggag
aggtcatacactcagcttgttcggctcatcatctttgatgaaattcaccttctccacgat
gagcgtgggccagttttggaagcattagtagcccgaactctgcgcaatgcggagaccact
ggggatgctgtcaggttagtaggattgtctgctactctgcctaactatgaagatgttgca
gcatttttgagagtcaaccttaaaacaggactcttcttctttgataacagtttcagacca
gtacctcttgctcagcaatacattggcatcacagaaaagaaagcaattaagcgttatcaa
gttatgaatgatattttatatgaaaaagtgatggagcatgcaggtaaaaatcagatactg
atatttgttcattcacggaaagaaactgccaagtcagctaaagccatccttgatatgtgc
ttagaaaaggatactcttggaaactttttacgagagggctctgcttcaacagaagtgcta
cggactgaggctgatcaagtgaagaacaatgatctaaaagggctgcttccatatggtttt
gctgtccatcatgctggaatgaatcgagttgaccgaaatttagttgaagatttgtttgct
gatcgtcatattcaagttttagtgtcaaccgctacattagcctggggtgttaaccttcca
gcccatactgttgtgattaaagggactcaagtatatgatgcaagcaaaggccgttgggtg
gaacttggagctctggatgttcttcagatgttgggtcgtgcaggcagaccacagtatgat
actaagggtgagggcattcttattacaaaccattctgagcttcagtattatctctccctt
atgaaccagcagttgcctattgagtctcaactcattaacaagctgcctgaccttcttaat
gctgaaattgtacttggttctgtccagagtgtacgggaagctgtcaactggttgggctat
acatacctgtatgtacgcatgattagagctggtaatttgtatgctgttcaggctgataat
tcagataagtatcttcagcagcaccgagcaaatctcatacattctgcagcactgaaacta
gaaaaaagcaatttgataaaatacgataagaagtctggaaatttccaggtcacagaattg
ggtcgcattgccagttatttctatgttacttgtgagacaatgaatgtttacaatcaacag
ctgaaaccaactctcagtgaaattgaacttttccgtgtgttttctcagagctctgaattt
aaaaatatcatggtgagagaagaggagaaattagaattaaagaagcttatggaacgtgta
cccattccgatcaaagagagcgtagaagaacctagtgccaaggttaacattcttttgcag
gcttacatttcacagcttaagttagatggatttgctctcatgtctgacatggtgtacgta
acacagagtgcaggccgactgatgagagccatgtttgagatcgtccttcatcgtgggtgg
gcacagctagctgacaaaactctcaacttgtgtaaaatggttgataaaaggatgtggcag
tcaatgtctcctctgagacaatttagaaaaattcctgaagaagccattcgcaaacttgaa
aagaaaagtgttccttgggagcgtctttatgatctgggtcctaatgagattggggagctg
atccgtatgcccaaaggtggaaagatgattcataaatacatccaccaattgcccaaactt
gacttggaaacacacattcagcccattacacgccaaatgcttaaagtagagctcaccatc
acaccagattttaagtgggatgaaaaaattcatggtcggtctgaggctttttggattatg
gttgaagatgttgatgcagaaaatattcttcatcatgaatactttttgttgaagcaaaag
tttgcagaggatgaacatgtagttaaattctttgttccggtatttgagcctctacatcca
cattacttcatccgtatcacatcagacaagtggctctcggcagaaactcagttacctgtg
tcattccgtcatctcatactcccagaaaaatatcctcctcccactgaacttcttgacttg
caaccattgcccatcactgctttaagaaacccacagtatgaagcactctacaaaactcta
aacaaatttcagcagttcaatcctattcagactcaagtattcaatgcaacatataattct
gatgacagtgtgttcattgcagcaccaactggttcaggcaaaacgctctgcgcagagttt
gctattttacgcactttcagtcaggatgaatctgcaagatgtgtgtatgtcgcatccaaa
gatgagattgttgaaagtatgtacgaacactggcaagaaaaatttagcaacttggagaag
agagttgtacttttaacgggtgagactggggctgacctaaaactattaaatagggcaaac
atagttgttagtacagctgaaaaatgggatgtactctcacgacgttggaagcagaggaag
aatgtacagaacatcagtctttttatagttgatgaactacaattaatgggtggatcagat
ggccctacactagaggtagtgtgctctcgtatccgctacattgcatccaaaatcagcagg
cacattcgtattgtagctctgagctcttctttagcaaatgctcgagatgtagctcagtgg
ctcggatgctcctctaattatacttttaatttccatccaaatgttcgacccttgccattg
gagctgcatattcagggctttaataatcctcacaatgcttctaggatttatgctatggct
aaacctgcctaccttgctattctgaagcacagtccacgcaagccttccatggtgtttgtg
ccatctcgtaaacagagtatgattactgcaagtgatcttctcacctttgccgcagcagat
aaagaaccacaaagatttctgcaagtgaatccacaagaaatggcagagttccttcctcaa
atcggtgatgagatgttaagagaattggtcagtcagggtgttggatatcttcacgaaggc
ctcagtgcacgtgatcggcggatggtggagaggttgtttgaagccgaggcaattcaggtg
gtagttgtgagtcgtgcattatgttgggctgtgaccgcaccctcacacttggtcatcatc
actgacacccagagctataatggccgtcttcataactatgaggactatccaatcacagat
accttacaaatggtgggacgtgcaaatagaccaaatgaagatgatgaggcaaagtgtgtt
ttgatgtgccattcttccaagaaggactattttaagaagtttctttatgaaccactgccc
attgagagtcaccttgaccatgcactacatgatcacttcaatgctgaaatcgtcactcgt
accattgaaaacaaacaggaggcagtagactatgtaacttggaccttcctttaccgtcgt
atgactcagaatcccaattattatggccttcagggggtttctcatcggcatttatctgat
catctctctgatttagtggaaaacaccctacatgatcttgaagagtctcgctgcatcacc
attgaagatgacatggacacggctcctctcaatttaggtatcattgcttcatattactac
atcaactatactaccatagagctgtttaacaagtctttgaatagtaagacaaagattcgt
ggtttacttgaaatcatctctagtgctgcagaatatgaaaatgttcctatccgtcatggt
gaagaggacacattgagacgacttgtgcaaaaggtgcccaacaagcctgagggaaaagtg
acagatcctcacacaaaaaccaaccttatgttacaagctcatctgtcacgtctcactctt
agtgcagaattgcaacaagatactgaacttgttctaggtcgtgccttaaggcttatacaa
gcttgtgtagatgtgctctcctccaatggatggcttgcacctgcattgtctgctatgact
ttggctcaaatggttactcaagctatgtggtccaaagattcttacttgaaacagttgcct
cattttacgggtgaaatgattgagcgttgtgaagcaaaggatgtaacatctgtctttgat
attctagagcttgaagatgatgatcgcaaccgtttgcttcaattgtctgatgcacagatg
acagatgtggctcgtttctgcaatcgttatcctagcattaatttagattatgaagtaatt
gattcggacagtattaccagtgggtcaatggtgaatgtagaagtggtacttgagcgtgaa
gatgagcctggaccagtcattgctcctttattcccacacaaacgagaagagggttggtgg
gtcattattggtgaccccaaaccaaactctcttatctccatcaagcgtctcactcttcag
cagaaagccaaggtcaagctggattttgtagcccctagtgagggttcttatgagtatagg
ctatatttcatgagtgatgcttatatgggctgtgatcaggaatataaggtacccttgaga
gtgagagaagcagaatctgaatcagagtcagagagtgattaa
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integrated database retrieval system
