Procambarus clarkii (red swamp crayfish): 123762732
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Entry
123762732 CDS
T07930
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123762732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123762732
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123762732
Spliceosome [BR:
pcla03041
]
Complex C
Other components
Step II factors
123762732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
OB_NTP_bind
DEAD
MAP6
RRM_1
AAA_22
zf_CopZ
HA2_C
T2SSE
Helicase_RecD
nSTAND3
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
123762732
NCBI-ProteinID:
XP_045605418
LinkDB
All DBs
Position
LG34:23443300..23458844
Genome browser
AA seq
2663 aa
AA seq
DB search
MGAKNTTSSSAKRQNKTGRNELSPQVHKFVESRATYASNSASVNVHEAVGLCTAPEILLV
TSQQSIPEIQPLGNKAIIPEQTVAGYIEKDERMNIKQQTAAEYLGKNNGSTIPQQTVAGY
VNSDNTTNTSRQTISSYVEIDDKATTPQQTSTVCVEKGDAATILLQNISEYVEEDVTSTF
SSQGGAGYIPGDAGNAISRQTRTKYADCDNTVTSLQQSATEAESIISKTAVVKKEVIDKS
KTDQVSSGQQQRDDVSLKLDAAILQNFNHLFKSTVTENMNWETKTHISIAENEVLETERG
IEDRDIKIKSKPEIDVSKPENKNKNCYSDLQPFIQETENGTGCAEDERRAPKNEKPSNHI
SEKILQSTLKERSMQNLGKTTQYVKKTPKNELVDNKNIILAKADATEIIITEEEVGINTA
EGPKDDESVKMNEDKDVLKLDQATDNRDECVFGGENADLDPTHFGAVQDRISVSASETVV
LGEKYDGETMIFNNREYCIGSSFKRQSDFDSFHKAKFSRESLATRFSIDEGLCKDEKSQT
QSLLRDERPQNPNLRRNERPQNPNLRRNERPQNLNLLRDERPQNPNLCRNERPQNRNLCR
NERPQNPNLFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNMFRNDRPQ
NPNMFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNLCRNERLQNRNLC
RNERPQNPNLLRDQRPQNPNLLRDQRPQNPNLLRDQRPQNPNLLRDEGPQNPNMLRDERP
QNPNMFRDERPQNPNMFRDERPQNPNMFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNM
FRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNMFRDDRPQNPNMFMDDRSQNPNLFRDER
PQNQITSKSKNVQNQSIFPKESAQSPLVSTSECLHGSHALSRERSQNSSVLARQGEQRSL
MSSQERGRILSMSANDTSKDKNINFIGMVGRSKKENCRPNRVHSKTTELYVKFAEAIEGN
IDILEYIKNRLPPGLEFTMINKTIEQDTKNTIVTLQCKSKRSAEHLKAELAKGNHYSQTK
ILCFDTLQEVRGLVMKKQRDIEISFEQNMQQITWKSESALAEHYDKLSDVKSRLEKIQSV
KSKFMSFEQFKAQRIEGCALEDKAKELELQREEFLKQVEYAVRELTKAKESLNFEKIAKE
TRLNLAIECNRLSNAFPIYARRSDILEIVKNNQVSVIIGETGSGKSTQIAQYFFQGGLAS
NGIIACTQPRKIAATSLAVHVAKELGTAVGQVVGYKVGMQTKKTNSTKILYMTDHILLNE
CLQDRKLSAFSCIIIDEAHERSIYTDLLLGMIKECLKDRPDLRLVITSATINPEVFVRYF
VECPVLFVSGRMFPVEVEWKEPVVGAESFGNYQEEAVVKAIEVHEKEDEGDILVFLTSPL
ETEKCCERFRDLMKGKPLNYVTLQLHGRLQGDEQQKVFDPVSGGKRKIVFATNCAETSVT
IPGIKYVIDTGLGKEMKFDPVRKMSTLAVSMVTQSSAKQRQGRAGRLGPGKCFRLYTEDD
FKKMNVDSLPEIMKVHIGHAMLKLMELGVDPLKFDYIMSPSIPAMEEAFASLVHIGAVSE
EKITDRGKWIAKMPFDPKYGAFVYEAVQVGAGLEAVIIAAASGTSSLFYRAGSNEEKEKA
DRHKIRFCHEGGDQLTLLSVFREWHKVPEKDKGKWCFSYSINGKAIKSVRETTNEVLHTL
KKEMKVDLKFSFGRPEKLDNLLVGLLFKALNRNLSHYLGHAKAGYSIVSTDQRVEVHPSS
ALVSLGSQSEWIVFDQVMRTSRDFAMQTTPIPESLVLKGIEEGWLHLQIEEAKKKRITVA
CQEYVGPQMFREFVGPRYVNMRNLETTLSEKFPNSFVVVEADWDKGELKVLSNEKNKECL
ADSLSQVLAPHRANFQLEESEERIGSMSMDISVRTVIGAGGSIVNVFMPEEFKIVKIFCS
LETIDDLSKEDVLIKFGQYGEIKECKKYYRKQKSSTIWGQITFGKTESAVEAVNGTKDEP
ELCARPNVRLPAHGICGLRTKIQWCRRRSRGFGFVEFANVEDFMAACRLRVLSVGGSTAM
LNVAKKSPQSIHVTKFNHLVTEDVLRQAFADALNIDPVKSIVRVNVIRENVGLDKERFSI
AKRTLLRKIEEFAQPGTFSLEVREPRSEKDINFIAFCMFNNLDVGYTACDEMNKEFYICN
ERVSVKVDIHSSLFIRKDIFKISGDAVKEEIKDIENESKEVKIKVKYLKSENVSVEFHTE
SINALAQARKRIQVIIRGDIIDCENNDQVRLLFTREGRKRLQTIMNDTGALIVTDDRVMA
LSIHGSLRSRMNAKADVDEYLQQLSQGTIKYIDLKGTGKPPGVMKALMLKYGTDLYGMQT
TAKLTTVNLDLRNHRVRLMGSDKAINEAVDIVDAVMTSLTGSGVITSSDDDPDCVTCFCP
VESKDLFRLECCGHAYCKECIKLQVDTAITSKDFPIVCGNEGCSSKFVWRDFVNLSRQGH
ITLAKLVNASLNSYVAQHKNDFHYCTTPDCPIVYRIREGGVPFFCPECNVKVCSSCHVNY
HDGLTCIMYKKVNEGDSLGAWLMKDINNRKICPNCSTPIEKIYGCNKMLCLGCKKFLCWT
CLAVFNTQNECYTHLEEVHGGYM
NT seq
7992 nt
NT seq
+upstream
nt +downstream
nt
atgggggccaagaacaccacatcaagctctgcgaagagacaaaacaagactgggagaaat
gaactatcgccacaggtgcacaagtttgttgagagtcgtgcaacatatgccagtaacagt
gcttctgtgaatgtccacgaggctgtgggtttatgcacggcacctgaaattttgctggtt
acttcgcaacagagtattcctgaaattcagccgttgggcaataaggctatcattccggaa
cagacagttgctggatatattgaaaaggatgagagaatgaatattaaacaacaaaccgct
gctgaatatttaggaaagaataatggaagcactattccacaacagactgttgctggatat
gtgaatagtgataatacaactaatacttcacgacagaccatctcttcatacgtggaaatt
gatgacaaagccaccactccacaacagacttctactgtatgtgtggaaaagggtgatgca
gctactattctattacagaacatctcagaatatgtggaagaggatgttacatccactttt
tcgagccagggaggtgctggatatatcccaggggatgctggaaatgcaatttcaagacaa
accagaactaaatatgcagactgtgataatacagtcaccagtttgcaacaaagtgctact
gaagctgaaagtattatttccaaaactgctgttgttaaaaaggaagtgattgacaaatca
aagactgatcaggttagttctggtcaacaacaaagagacgatgtcagtcttaagttagat
gcagctattcttcagaatttcaatcatctatttaagtcaacagttactgagaatatgaac
tgggagaccaaaactcacataagcattgctgaaaatgaagtccttgaaactgaaagagga
atagaagatagggacattaaaataaaaagtaaaccagaaattgatgtttcaaaacctgaa
aataaaaataagaactgttactctgatctgcagccatttatacaagagaccgagaacggt
acaggttgtgcagaagatgaaaggagagcaccaaaaaatgaaaaaccatcaaatcatatt
tcagaaaagatccttcagagtactttaaaggaaagatccatgcaaaatctaggaaagacc
actcagtatgttaagaaaaccccaaaaaatgaacttgtggataataaaaatataattctt
gcaaaagctgatgccacagaaataataataacagaggaagaagttggcataaatactgct
gaaggaccaaaggatgatgaaagtgtcaagatgaatgaagacaaagacgtcttaaaactt
gatcaagctacagacaacagagatgaatgtgtatttggaggcgaaaatgcagatttggat
ccaacacacttcggggcggttcaggatcgtatatcagttagtgcttcagagacagttgta
cttggagaaaaatatgatggagaaacaatgatttttaataacagagaatattgcattggt
tcttcttttaaaagacagtcagattttgattccttccataaggcaaaattttctagagaa
agtcttgcaaccagattttcaatagatgaagggctatgtaaggatgaaaagtcgcagact
cagagtctgttaagggatgaaagaccacagaatccaaacctgcgtaggaatgaaagacca
cagaatccaaacctgcgtaggaatgaaagaccacagaatctaaacctgttaagggatgaa
agaccacagaatccaaacctgtgtaggaatgaaagaccacagaatcgaaacctgtgtagg
aatgaaagaccacagaatccaaacctgtttagggatgatagaccacagaatccaaacatg
tttagggatgatagaccacagaatccaaacatgtttagggatgatagaccacagaatcca
aacatgtttagggatgatagaccacagaacccaaacatgtttaggaatgatagaccacag
aatccaaacatgtttagggatgatagaccacagaatccaaacatgtttagggatgataga
ccacagaatccaaacatgtttagggatgatagaccacagaatccaaacatgtttagggat
gatagaccacagaatccaaacctgtgtaggaatgaaagactacagaatcgaaacctatgt
aggaatgaaagaccacagaatccaaacctgttaagggatcaaagaccacagaatccaaac
ctgttaagggatcaaagaccacagaatccaaacctgttaagggatcaaagaccacagaat
ccaaacctgttaagggatgaaggaccacagaatccaaacatgcttagggatgaaagacca
cagaatccaaacatgtttagggatgaaagaccacagaatccaaacatgtttagggatgaa
agaccacagaatccaaacatgtttagggatgatagaccacagaatccaaacatgtttagg
gatgatagaccacagaatccaaacatgtttagggatgatagaccacagaatccaaacatg
tttagggatgatagaccacagaatccaaacatgtttagggatgatagaccacagaatcca
aacatgtttagggatgatagaccacagaatccaaacatgtttagggatgatagaccacag
aatccaaacatgtttatggatgatagatcacagaatccaaacctgtttagagatgaaaga
ccacagaatcagataacaagtaaaagtaaaaatgttcagaatcaaagtatttttcccaaa
gaaagtgcacaaagtccacttgtgtcaactagtgaatgcttgcatggatcacatgcgtta
tccagagaaagatcgcaaaattcaagcgtgttggctagacaaggagagcagaggtcatta
atgtcatctcaggagaggggtcgtattttgagtatgtcagctaatgacacatctaaagat
aaaaatattaatttcattggaatggtaggtagatctaagaaagaaaattgtagacccaat
cgtgtgcatagcaaaactacagagctatatgtgaaatttgctgaagcaatagaaggaaat
atagatatattagagtatattaaaaatcggttgcctccaggactagagtttactatgata
aacaaaaccattgagcaggacacaaagaacaccattgtaacgttgcagtgcaagagtaag
cgttcagcagaacacttaaaagcagaacttgcaaaaggaaaccattattctcaaacaaaa
attctttgctttgataccttacaagaagtaagaggacttgtaatgaaaaagcaacgtgat
attgagatatcttttgagcaaaacatgcagcaaattacatggaaatcagagtctgctctt
gcagagcattatgataagttatcagatgttaagtctcgcctagaaaagatacagagtgta
aaatccaagtttatgtcttttgaacaatttaaagcacaacgcattgaaggatgtgccttg
gaggataaggctaaagaactagaactacaaagagaggaatttcttaagcaagtagaatat
gccgtacgtgaacttactaaagcaaaggaatctttaaattttgagaaaattgctaaagaa
actagactcaatttagcaattgaatgtaatagactttcgaatgcttttcctatttatgca
agacgctcagatattcttgaaatcgtcaaaaacaatcaagtatcagttataattggtgaa
acaggatcaggaaagagcacccaaattgcacaatatttttttcaaggaggcttagccagt
aatggaataattgcgtgcacgcaacctcgtaagattgctgcaactagcttggccgtacat
gttgctaaagaactaggaacagcagttggtcaggttgttggttacaaagtaggaatgcag
acaaagaaaacaaattcaacaaaaattttatatatgacagatcacatcctactgaatgag
tgtttacaagatcgaaagcttagtgcattttcctgcatcattatagatgaagctcatgaa
cggagcatttatactgatctgttacttggaatgatcaaagaatgtctgaaagatcgaccg
gatcttcgtcttgtaatcacttcagccaccattaatccagaagtctttgttaggtatttt
gtagagtgccctgttctttttgtgtcaggaagaatgttccctgtggaagtagaatggaag
gaaccagtagtgggagctgaatcctttggtaattaccaagaggaagctgttgtaaaggcc
attgaagttcatgagaaggaggatgaaggagacatattggtctttttgacatccccatta
gaaactgagaagtgctgtgaacgttttcgggatttaatgaaaggtaaaccattaaattat
gttactcttcaattacatggacggttacaaggggatgaacaacaaaaggtctttgacccc
gtatccggaggcaagaggaaaattgtctttgccacaaattgtgcagaaacttcagtcact
attcctggaattaagtatgttatagatactggcctagggaaagaaatgaagtttgatcca
gttcgcaagatgagtacccttgcggtaagcatggtgacacagagttcagctaaacaaagg
cagggtcgtgcaggacgactaggtcctggaaaatgttttaggctgtatacagaagatgat
tttaaaaagatgaatgttgattcacttcctgaaataatgaaagttcatattggtcatgct
atgctaaaactaatggaactgggtgtggatcccttgaaatttgattatatcatgtcccct
tccattcctgccatggaagaagcatttgcatcactagtgcacataggtgcagtgtcagag
gaaaagataactgatcgaggaaagtggattgctaaaatgccgtttgacccaaagtatggc
gcttttgtttatgaagctgttcaagttggagctggactggaagcagttattatagcagca
gcaagtggaactagctcactattttacagagcgggaagtaacgaagaaaaagaaaaagca
gacagacataaaattaggttttgtcatgaaggtggtgatcaacttactctgttatctgtg
tttagagaatggcacaaggtaccagaaaaagataagggaaaatggtgtttcagttattcc
atcaatggaaaggcaataaaaagtgtccgtgaaacaactaacgaagtgttgcatacacta
aagaaagaaatgaaagttgaccttaaattttcctttggtagaccagaaaaattagataat
ttgctggtgggtcttctatttaaggctttgaatagaaatttgagtcattatcttggacat
gcaaaggcagggtacagcattgtgtccacagaccagagggttgaggttcatccgtcttca
gctttagtatcactcgggagtcagtcagagtggattgtatttgatcaggttatgagaaca
tccagagattttgcaatgcaaactacaccaatccctgaatccttggtgttaaaaggaata
gaagagggttggcttcatttgcagattgaagaagccaagaaaaagcgtatcactgtagca
tgccaagaatatgttggcccccagatgttcagggagtttgttggccctcgctatgttaac
atgaggaaccttgaaacaacactctcagaaaaatttccaaactcgtttgttgtagttgaa
gctgattgggataagggcgagttgaaagtattatcaaatgagaaaaataaggaatgtctt
gctgatagtctgtctcaggttcttgctcctcacagagcaaattttcaattggaagaaagc
gaagagcgtattggttccatgtcaatggatatatctgtaaggactgtcattggagctgga
ggtagtattgttaatgttttcatgccagaagagtttaaaatagtaaaaatattctgttct
ttagaaaccatagatgatctgtcaaaggaagatgtattaataaaatttggtcagtatgga
gagataaaagaatgtaaaaaatattaccgaaagcaaaaatcctcaactatttggggacaa
atcacttttgggaaaactgaatctgctgtcgaggctgtcaatgggacaaaggatgaacct
gaattgtgtgcacgtccaaatgtacgtctcccagcacatggaatttgtgggttaaggaca
aagattcagtggtgtagacggcgttctagagggtttgggtttgtagagtttgccaatgtt
gaagatttcatggcagcctgtagactacgtgtgttgagtgttggaggttctacagcaatg
ctaaatgttgctaagaagtctcctcagagtatacatgttacaaaatttaaccatttagtg
acagaagatgttttacgtcaagcatttgctgacgctctgaatattgatcctgttaaaagc
atagtgagagttaatgtgattagagaaaatgtgggcctggataaagaaaggtttagtatc
gccaagaggacccttcttcgaaaaattgaagaatttgcgcagcctggtacatttagctta
gaggtaagagagccacgatcagaaaaggatattaacttcatagcattttgtatgtttaac
aatttagatgtgggatatactgcatgtgatgagatgaataaggaattttatatatgcaat
gaaagagtttcagtgaaggttgatattcacagttctttattcattcgtaaggatatattt
aagataagtggggatgcagtaaaggaagaaattaaagatattgagaatgaaagtaaagaa
gtaaaaataaaagtgaaatatttgaagagtgagaatgtgtctgtggaattccacactgag
agtattaatgcccttgctcaagctagaaaacgtattcaggtgatcatcaggggggatatt
attgactgtgagaacaatgatcaagttagattactgtttacacgagagggtaggaaaagg
cttcaaactatcatgaatgacacaggagctctcatagtaactgatgatagggtaatggca
ctttccatccatgggtcattaagaagcagaatgaatgcaaaggctgatgttgatgaatat
ctacagcaactctctcaaggtactataaaatatattgatttaaaaggcactgggaagcct
ccaggagtcatgaaagcacttatgcttaaatatggaacagatttatatggtatgcagaca
acagcaaagctaacgactgttaatctagaccttaggaaccatcgagtaagactaatggga
tcagataaggccattaatgaggcagttgatatagtggacgcagttatgacaagtctgaca
ggtagtggagtgattacctcaagtgacgatgaccctgactgtgtaacttgcttctgtcca
gttgaaagtaaggacctcttcaggctggaatgttgtggtcatgcttattgcaaggaatgc
atcaaactccaagtagatacagccatcaccagcaaagacttccctatagtgtgtggaaat
gagggatgctcgtcaaagtttgtgtggagagactttgtaaatctctcacgtcagggacac
attacattagctaagcttgtgaatgcctctcttaattcatatgtggctcagcacaaaaat
gatttccactattgcactactccagattgtcccattgtgtataggatacgagaaggtgga
gtcccattcttttgcccggaatgtaatgtcaaagtttgctcaagttgtcatgttaattat
catgatggcctcacttgtatcatgtacaagaaggtgaatgaaggtgatagtttgggtgca
tggttgatgaaggatattaataacagaaaaatttgtccaaactgctctacacccattgag
aagatttatgggtgtaacaaaatgttatgtttaggatgtaagaaattcttatgctggacc
tgtttggcagtctttaacacacaaaatgagtgttatactcaccttgaggaagtgcatggt
ggatacatgtaa
DBGET
integrated database retrieval system
