Procambarus clarkii (red swamp crayfish): 123763589
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Entry
123763589 CDS
T07930
Name
(RefSeq) pre-mRNA-splicing factor RBM22 isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123763589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123763589
Spliceosome [BR:
pcla03041
]
Complex B
Other components
Prp19-related factors
123763589
Complex C
123763589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
RRM_YTH1
zf-CCCH
zf-CCCH_4
Nup35_RRM_2
zf-CCCH_10
RRM_3
zf-CCCH_12
FYVE
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
123763589
NCBI-ProteinID:
XP_045606740
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Position
5:complement(39101903..39111493)
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AA seq
491 aa
AA seq
DB search
MAMSKSTNTYNRQNWEDSDFPILCQTCLGDNPYVRMMRDRYGKECKICTRPFTVFRWCPG
ARMRFKKTEVCQTCAKIKNVCQTCLLDLEYGLPTQVRDSALSLTDDMPKSEVNKEYYIQN
MERQMAASSDGSTAGGALGKTKSHSEMLLRLARTTPYYKRNRPHICSFWVKGECKRGEEC
PYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLLKRAAAMPRLEPPEDKSITTLYVGNL
GDRIGEKELRDHFYQYGELRSVNVVAKQQYAFVQFTTRSAAELAAERTFNKLIIQGRRLN
IKWGRSQARQGGVGIGGIEDLEGDDTAPQPLEPVPGLPTLPPPPEELHNNFFNLPSTAAS
IPLPPGQAPPAAGAPTIRPPMPPGHAPPRPPAPPPGSLPGGPPPLGTPLGPRPPPGVPPA
PPGHLPPLQPPPFFPPHLRAPLRPPPGVRPPAYFPQPPPIPGVGPPPPLTHGIIHYPSQD
PTQMGANPDKK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtctaagtctacaaacacttacaaccggcagaattgggaagattcggacttt
ccaattctatgccagacgtgtctcggggataatccttatgttaggatgatgcgtgataga
tatgggaaggaatgtaagatctgcacccgtcccttcacagtctttaggtggtgccctggt
gcacgaatgagattcaaaaagacagaagtatgccagacttgtgctaagattaagaatgtt
tgtcagacctgcttgttagaccttgagtatggtcttcctacacaggtacgagactctgcc
ctcagcttgactgatgatatgccaaagagtgaagtcaacaaggaatactatatccagaac
atggagagacaaatggcagcttcatcagatggcagtacagcaggaggggcattagggaaa
accaagtcgcactcagaaatgctccttcgcttagcacgtacaactccatactataagcga
aacaggccacatatttgctcattttgggtcaaaggggaatgtaagagaggagaagaatgt
ccttatcgacatgaaaagcctactgaccctgatgatcctctagccgatcagaatattaaa
gatcgttattatggtgttaatgatcctgttgctgacaaacttcttaagagggcagcagca
atgccaagacttgagccccctgaagataaatctattactactctgtatgtaggtaatttg
ggtgataggattggtgaaaaagaactgagagaccacttttatcagtatggtgaactacgt
agtgtaaatgttgtggctaaacagcagtatgcatttgtccagtttactactcggtctgct
gcagagctagcagctgaacgtacttttaacaagctcattatacagggtcgacgccttaat
attaagtggggacgatcacaagctagacaaggaggagtaggtattggtggtattgaggat
cttgaaggtgacgatactgctcctcaacctctcgaacctgtacctggccttccaacactt
cctccgccacctgaagaattgcacaataactttttcaatttaccttcaacagctgcaagc
ataccgttgcctccaggccaggctcctccagctgctggtgctccaacaatacgacctcca
atgcctccaggtcatgccccacctagacctcctgcccctcctcctggtagtcttcctgga
gggcctcctcctttgggtacccctcttggtcctcgtcctcctccaggtgtgcctccagcg
cctccaggccatttgccacctttacagcctcctccattctttcctcctcatcttcgtgca
cccttgcgccctcctccaggggttcgtccccctgcatactttccgcagccaccacctatc
ccaggtgttgggccaccacctcccctcacccatggtattatccactatccttcacaagat
cctactcaaatgggagctaatcctgataaaaagtag
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