Procambarus clarkii (red swamp crayfish): 123763739
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Entry
123763739 CDS
T07930
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcla03021
]
123763739
03036 Chromosome and associated proteins [BR:
pcla03036
]
123763739
Transcription machinery [BR:
pcla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123763739
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123763739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
HHH_9
HHH_3
S1
Tex_YqgF
Tex_N
SH2
Spt6_S1
Motif
Other DBs
NCBI-GeneID:
123763739
NCBI-ProteinID:
XP_069160469
LinkDB
All DBs
Position
52:10539542..10554716
Genome browser
AA seq
1776 aa
AA seq
DB search
MSQFIYSGAEESEEEQEKYEENERKKFKKLKTVIDDSSEEDDDDDEEKIREENKDFINDD
DEEDDEGDSGSDSEKYGKRKRRKDDEDKTNYLDDDDIDLIEENTGMKLDRKRKYKRLKRI
VDEESDVEEEDVQGQIRREIFEGSDDEEEDGASALHPPQHPEMYASEEEESDEENFIVDD
KTPNVKQERMAMLEPGGMEVAREIFGGDYHFEDFEQHEEWEERENDDDDHENDEKGDEGR
EHPRGRKDRGNQVKKTIFEVFEPSELERGHLTDQDHQIRKLDIPERFQLRRIPVTRTRGD
GDDRSADKELTQEAKWIXHHAFFRPFISNQEGREKARHGSHKDTNTIQKIYNALDLMRNQ
TFEIPFIAFYRKEEVCPELNIRDLWKIYRWMKKWCQLKYRKENLRSLFQSMREYQGDHTT
KDPDGSHLENMRILQEEDIVRIEEIETSEQFNDYYKFFLLHYSKDQLSMRDHMKTKHRKQ
RTAPRVTRGFKKHDHGERDQNGAGIEDGKIQRKVDEYEDTEDADEYEKSGNNKNKKGSLR
ANEDVEKEVETEIEEQMEEENHESEEDSESLRRVVRKHEYELLRKAGIESLTNKFGLTAE
QFGENLRDNYQRFDFQQWPEDPTREAKQLISKICSTPERVLEVAVRMVGWQLSCEPLIRR
TVREVYFKRARISSRPTPQAVNIIDEHHSLYELKYLKDKPVIDLQGDQFLRLKCGVEDKL
LTVSFSDTIEGSTTKTYLDEMKQLYCRDEFSQVVQDWNDLRGRAIEFAYKRIIEDLKREL
SQRLLQESNDHVMEKCCSKLNNWIKIAPYNPGDFSGEDEDWDTEKGFXVFSIAFVPDLSQ
AAFGCCIDIDGDCCEYIRLPHLLKRRNAYNERDALAKKSDIRRMQDFITRCKPHVISICG
QSREALMVKEDLIQILKDLEKQERFPKINTEIIDNDLAHIYAMSKKGEADFLDYPPLLRQ
AISVGRRVQDPLIEFSQLCNADEELLNIKFHSLQDQLNSKELLDALYTEFVNCTNEVGVD
LNRAVAHPYTQNLVQFVCGLGPRKANLLIRNMKQNNHRLENRNQLVVNFHMGPKIFINCA
GFIKIDTNALGDSDNYIDVLDSTRIHPEAYDWARKMVFDALDYEDENGEPAEALKEILET
PEKLSELDLKAFANELQNQGFGKKNTTLYDIKRELKHRYRDFRSTYRSPTPEEVFSILTK
ESPETFYVGKLVQATVTNFIHRKLRRDQVDNAYPLRTEGTGLWQCPFCLKNYFPELSEVW
NHFDAGDCPGPVIGIKVRLDNGISGFISIKNLSDKTVINPAERVRRDCLVLCRIMKIYPD
KFSVDLTSRSSDLQDRNNKWKAPKDTYYDHEAEEKDLNLDRKKMDQKASRYQKRVIVHPS
FRNIDYNEAEKVMQELEQGDVIIRPSSKGINHLTATWKVTTGICQHIDVLEQAKQYDFSL
GQKLWIGNEEFDDLDEIITRHILPMASNVRQILEHKYYKESIMGNKEKAAELLKEEKRKN
PKSIPYIFSPRKDLPGKFLMSYLPRAKVIHEFVTVNPEGFKFRQKMQFLNLARLLNWFKQ
NFHRTLSGATPRMMSTGTSYMGNSTPYLMGVDAFTIQKVAQNLNPQMLHNLSQAATNTPC
SVNTSGGFYHGFSKYANTPYTPSDQTPFMTPYATPGPSTIPRYNGSQTLVPSNPTPSHHK
VTGHLPQPSRCGCPVSSQAKKKDCKMAADALVEVNGATNGQNRRRMTPKCNAGNQSTPRN
TNQYNVRTPRHTPQYDDHTSRNTPRYNNQTPRLFHG
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttcatttactcgggagcagaggaaagtgaagaagagcaagaaaaatatgaa
gaaaatgaaaggaaaaaatttaaaaaactaaaaacagttatagatgactcttctgaagag
gatgatgacgatgatgaagagaaaattcgtgaagaaaataaagacttcattaacgacgac
gatgaagaggatgatgaaggagattcggggtcagacagtgaaaagtatggcaaacgaaaa
cggcggaaggacgatgaagataaaaccaactacctcgatgatgatgatattgatcttatt
gaggagaacactggtatgaaacttgacagaaagagaaagtataagcgtttgaagaggatt
gtggatgaagaatctgacgtagaagaggaagatgtacagggtcagattcgaagagagatc
ttcgagggttcagacgatgaggaggaggatggggcctccgctctccaccctccacagcac
cctgaaatgtacgcgtcagaggaggaagagtctgatgaagagaatttcattgttgatgac
aagacacccaatgtcaaacaggagaggatggctatgcttgaacctggtggaatggaggtt
gcccgtgaaatattcggcggtgattatcattttgaggactttgaacaacatgaagaatgg
gaggagcgtgaaaatgatgatgatgaccatgagaacgatgaaaaaggcgatgagggacga
gagcatccccgaggtcgcaaggatcgcgggaatcaagtcaagaagactatttttgaggta
tttgaacctagtgaattagagcgaggccatttgactgaccaagatcatcaaatccggaag
ctggatattcccgagagattccagctgaggcggatacctgtgactcgcacccgtggagat
ggtgacgatcgctcagcagataaagagctgactcaagaagccaagtggatctaacaccat
gcattcttcaggccatttatatccaatcaggaggggcgtgaaaaggcaaggcatggctcg
cacaaggatactaatacgatccagaaaatatacaacgccctggacttgatgaggaaccaa
accttcgaaattccatttatagccttttataggaaggaagaggtctgccctgaattaaac
attcgtgatttatggaaaatctatcgttggatgaaaaagtggtgtcaactgaagtatcgc
aaggagaacttgcggtcactcttccagtcaatgagagaataccaaggtgatcacaccacg
aaggacccagatggttcacatctagaaaatatgcgcattcttcaggaggaggacattgta
agaattgaggagattgaaacttcagaacagttcaatgattattacaaatttttcctgctt
cactatagcaaagatcagctatcaatgcgtgaccacatgaaaaccaagcacaggaagcag
agaaccgcaccaagagtcactaggggttttaagaagcatgatcatggtgaacgggaccaa
aatggtgctggtattgaggatgggaagattcagaggaaagtagacgaatatgaggataca
gaggatgcagatgaatatgagaagagtggtaataataaaaacaagaaaggttcattgaga
gctaatgaggatgtagaaaaagaggtggagacagaaatagaagaacaaatggaggaagaa
aatcacgaatctgaggaagactctgagtctttgagaagagttgttcgaaaacacgagtat
gaacttctgaggaaggctggtattgagtcacttacaaataaatttggcctgactgctgag
cagtttggtgagaacctacgtgataactatcagaggtttgattttcaacagtggccagag
gaccccacgagggaagctaagcagctcatttccaaaatatgcagcaccccagagcgagtc
cttgaagtagctgttaggatggtgggttggcagctgtcttgtgaacccttaataagacgc
acagttagagaagtatactttaaacgtgccagaatcagtagcaggcccactcctcaggct
gtgaacatcattgatgaacatcattcactttatgaacttaaatatttaaaggacaaacca
gtcatagatctacagggtgaccagttccttcgtctcaaatgtggtgttgaagacaaactg
ttgaccgttagcttttccgataccattgaaggaagtacaactaagacttacctggatgaa
atgaagcagttgtactgccgagatgagttttcccaggttgtccaagactggaatgatctg
agaggccgggcaattgaatttgcctacaaacggattattgaagatcttaaaagggaattg
tctcaacgtttgctccaggaatcgaatgatcacgtgatggaaaagtgttgcagtaaactc
aataactggataaaaattgcaccctataaccccggagacttttctggtgaagacgaagac
tgggatactgaaaaaggcttctgagtattttctattgcatttgttccagacctttcccag
gcagcatttggttgttgcattgacattgacggtgattgttgtgaatatattcgtctccca
catttactcaaacggcgcaatgcttacaatgaaagagacgctttggctaaaaaaagtgat
attaggcgcatgcaggattttattactcgctgtaaaccacatgttatttccatatgtgga
cagtctcgagaagctctcatggttaaggaagacctgattcaaattctcaaagatctagaa
aaacaagaaaggtttcctaaaataaatacagaaatcattgacaatgacctagctcacata
tatgcaatgtccaagaaaggagaagcagatttccttgattaccctccactattacggcag
gctatatcagttggtcgacgtgttcaggatccattgattgaattctcgcagctatgtaat
gctgatgaagaattacttaacattaagttccacagtctacaggaccaattaaactctaag
gaactactcgatgctctgtacactgaattcgtcaactgcactaatgaagttggggtcgac
ctaaatcgtgccgtagcacatccatatacacagaacttggtccagtttgtttgtggttta
ggaccacgaaaggccaaccttcttattaggaatatgaagcagaataatcatcgtctagaa
aacaggaaccagttagttgtgaacttccacatgggtccaaagatattcattaactgtgca
ggatttattaaaatagacaccaatgctttgggagacagtgataattatatagacgttcta
gattctaccagaattcatccagaagcttatgactgggctcgaaaaatggtttttgatgca
ctagattatgaagatgaaaatggagaacctgcagaagccttgaaggaaatcttagaaact
ccagagaaacttagtgagcttgatcttaaagcttttgctaatgaactacagaaccagggc
tttggcaagaagaacacaactttgtatgacattaaacgtgagctgaaacatagatacaga
gattttaggtcaacctacaggtctccgacgccagaagaagttttcagtatcttgacaaag
gagtcgccggagactttttatgtgggtaagcttgttcaggctaccgtcacaaattttata
catcgcaaactccgtcgagatcaagtggataatgcctatcctctcagaactgaaggtaca
ggtctttggcagtgtcccttctgtctaaaaaattattttcctgaactaagtgaagtgtgg
aatcactttgatgccggtgattgcccaggtccagtcataggaattaaagttcgattagat
aacggaatatcaggtttcatcagtataaaaaacttgtcggataaaacggtgataaatcca
gcagaaagagtgagaagagattgtttagttctttgtcgtatcatgaaaatttatcctgat
aaattttcagttgatctcacgtcgcgatcatcagaccttcaggaccgaaataacaagtgg
aaggctccaaaagacacttattatgaccatgaggctgaagaaaaagatttaaatttggac
aggaaaaagatggaccaaaaagcaagtcggtatcaaaagcgagtgattgttcatccctcc
ttcagaaacattgactataatgaagctgaaaaggttatgcaggaattggagcaaggtgat
gtgatcatacgaccatcaagtaaaggcattaatcatctcactgctacctggaaagttaca
acaggaatctgtcagcatatcgatgtgctggaacaagctaagcaatatgacttttctctt
ggtcagaaactatggattggaaatgaagaatttgatgatttggatgaaattattaccaga
cacattttacctatggccagtaacgtaagacaaatacttgaacacaaatattacaaggag
tctatcatgggcaataaggagaaagcagcagagttactgaaagaggagaaaaggaaaaat
ccgaagtcgatcccgtatatcttttcgcctaggaaggatttgccaggaaagtttctcatg
tcatatttaccaagagcgaaagtgatccatgaatttgtaactgtcaatcctgaaggtttc
aagtttaggcagaaaatgcaattcctaaatcttgccagactacttaattggtttaagcag
aatttccatagaacattatcaggtgcaacaccaagaatgatgtccacaggcacgtcatac
atgggcaactcaacaccatatcttatgggtgttgatgccttcacaattcagaaagtggct
cagaacctaaatccacaaatgctgcataacctctcccaggcagccactaatacaccttgt
agtgtcaacacttctggaggattctatcatggtttctcaaaatacgctaatactccttac
acaccttcagatcagacaccattcatgacaccgtatgccaccccggggccatccaccata
cctcgctataatggatcacagacacttgtgccatcaaacccaactccctcacatcacaaa
gtaactggacacttacctcagccatctcgctgtggatgcccagttagcagccaagcaaaa
aaaaaggattgcaaaatggcagcagatgctttggtggaagttaacggtgcgacaaatgga
caaaatagacgaaggatgacgccaaaatgcaatgctggaaaccagtcaacacctcgcaat
actaatcaatataatgtccgcacacctcgccatactcctcaatatgatgaccacacatct
cgcaatactccacgatataataaccaaacacctcgccttttccatggttaa
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integrated database retrieval system
