Procambarus clarkii (red swamp crayfish): 123763742
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Entry
123763742 CDS
T07930
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcla03021
]
123763742
03036 Chromosome and associated proteins [BR:
pcla03036
]
123763742
Transcription machinery [BR:
pcla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123763742
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123763742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
HHH_9
HHH_3
S1
Tex_YqgF
Tex_N
Spt6_S1
Motif
Other DBs
NCBI-GeneID:
123763742
NCBI-ProteinID:
XP_069160472
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All DBs
Position
52:10624748..10644372
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AA seq
1839 aa
AA seq
DB search
MSVSTAASADKTLKRVRLTVVETSSEVYYPPPASSSHPRIPSDLCISGRSVHSCCLPSVD
VDVHLLEVAFAGIFETQLRSEVGLLPSDASSPYKRSFDEEKIREENKDFINDDDEEDDEG
DSGSDSEKYGKRKRRKDDEDKTNYLDDDDIDLIEENTGMKLDRKRKYKRLKRIVDEESDV
EEEDVQGQIRREIFEGSDDEEEDGASALHPPQHPEMYASEEEESDEENFIVDDKTPNVKQ
ERMAMLEPGGMEVAREIFGGDYHFEDFEQHEEWEERENDDDDHENDEKGDEGREHPRGRK
DRGNQVKKTIFEVFEPSELERGHLTDQDHQIRKLDIPERFQLRRIPVTRTRGDGDDRSAD
KELTQEAKWIYHHAFFRPFISNQEGREKARHGTHKDTNTIQKIYNALDLRNQTFEIPFIA
FYRKEEVCPELNIRDLWKIYRWDEKWCQLKYRKENLRSLFQSMREYQGDHITKDPDGSHL
ENIRILQEEDIVRRLKLQCSEQFNDYYKFFLLHYGKDQLSMRDHMKTKHRKQRTAPRVTR
GFKKHDHGERDQNGAGIEDRKIQRKVDEYEDTEDADEYEKSGNNKNKKGSLRANEDVEKE
VETEIEEQMEEENHESEEDSESLRRVVRKHEYELLRKAGIESLTNKFGLTAEQFGESLRD
NYQRFDVQQWPEDPTREAKQLISKICSTPERVLEVAVRMVGWQLSCEPLIRRTVREVYFK
RARISSRPTPQAVNIIDEHHSLYELKYLKDKPVIDLQGDQFLRLKCGVEDKLLTVSFSDT
IEXNTTKTYLDEMKQLYCRDEFSQVVQDWNDLRGRAIEFAYKRIIEDLKRELSQRLLQES
NDHVMEKCCSKLNNWIKIAPYNPGDFSGEDEDWDTEKGFRVFSIAFVPDLSQAAFGCCID
IDGDCCEYIRLPHLLKRFNAYNERDALAKKSDIRRMQDFITRCKPHVISICGQSRESLMV
KEDLIQILKDLEKQERFPKINTEIIDNDLAHIYAMSKKGEADFLDYPPLLRQAISVGRRV
QDPLIEFSQLCNADEELLNIKFHSLQDQLNSKELLDALYTEFVNCTNEVGVDLNRAVAHP
YTQNLVQFVCGLGPRKANLLIRNMKQNNHRLENRNQLVVNFHMGPKIFINCAGFIKIDTN
ALGDSDNYIDVLDSTRIHPEAYDWARKMVFDALDYEDENGEPAEALKEILETPEKLSELD
LKAFDNELQNQGFGKKNTTLYDIKRELKHRYRDFRSTYRSPTPEEVFSILTKESPETFYV
GKLVQATVTNFIHRKLRRDQVDNAYPVRTEGTGLWQCPFCLKNYFPELSEVWNHFDAGDF
PVPVIGIKVRLDNGISGFISIKNLSDKTVINPAERVRRDCLVLCRIMKIYPDKFSVDLTS
RSSDLQDRNNKWKAPKDTYYDHEAEEKDLNLDKQKMDQKASRYQKRVIVHPSFRNIDYNE
AEKVMQQLEQGEVIIRPSSKGINHLTATWKVTTGICQHIDVLEQAKQYDFSLGQKLWIGN
EEFDDLDEIITRHILPMASNVRQILEHKYYKESIMDNKEKAAELLKEEKRKNPKSIPYIF
SPRKDLPGKFLMSYLPRAKVIHEFVTVNPEGFKFRQKMQFLNLAGLLNWFKQNFHRTLSG
ATPRMMSTRTSYMGNSTPYLMGVNAFTIQKVAQSLNPRMLHNLSQAATNTPCSVNTSGGF
SHGFSKYANTPYTPSDQTPFMTPYATPGPSTIPRYYGSQTLVLSNPTPSHQYEAAYSQHM
MTKVTGHTPHPSRCGSPVSSQVKKKDCKMAADALVDVNGATNGHNRRRMTPQCNAGNQST
PRNTNQYNVRTPRHTPQYDDHTSRNTPRYNNXTPRLFHG
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtctcgactgcagcgagcgcagataaaacgctgaagcgggtgcgtctgacagtg
gtcgagacctcctctgaagtctattaccctccgcctgcctcttcaagtcatcctcgaatt
ccttctgacctttgcattagtggcagatctgtccacagctgctgcctcccaagtgttgat
gtcgatgttcatctgcttgaagtcgcgtttgcaggcatctttgaaacgcagctgaggtct
gaggtgggcctccttccttctgatgccagttctccatacaagaggtcctttgatgaagag
aaaattcgagaagaaaataaagacttcattaacgacgacgatgaagaggatgatgaagga
gattcggggtcagacagtgaaaagtatggcaaacgaaaacggcggaaggacgatgaagat
aaaacaaactacctcgatgatgatgatattgatcttattgaggagaacactggtatgaaa
cttgacagaaagagaaagtataagcgtttgaagaggattgtggatgaagaatctgacgta
gaagaggaagatgtgcagggtcagattcgaagagagatcttcgagggttcagacgatgag
gaggaggatggggcctccgctctccaccctccacagcaccctgaaatgtacgcgtcagag
gaggaagagtctgatgaagagaatttcattgttgatgacaagacacccaatgtcaaacag
gagaggatggctatgcttgaacctggtggaatggaggttgcccgtgaaatattcggcggt
gattatcattttgaagactttgaacaacatgaagaatgggaggagcgtgaaaatgatgat
gatgaccatgagaacgatgaaaaaggcgatgagggacgagagcatccccgaggtcgcaag
gatcgcgggaatcaagtcaagaagactatctttgaggtatttgaacctagtgaattagag
cgaggccatttgactgaccaagatcatcaaatccggaagctggatattcccgagagattc
cagctgaggcggatacctgtgactcgcacccgtggagacggtgacgatcgctcagcagat
aaagagctgactcaagaagccaagtggatctatcaccatgcattcttcaggccatttata
tccaatcaagaggggcgtgaaaaggcaaggcatggcacgcacaaggatactaatacgatc
cagaaaatatacaacgccctggacttgaggaaccaaaccttcgaaattccatttatagcc
ttttataggaaggaagaggtctgccctgaattaaacattcgtgatttatggaaaatctat
cgttgggatgaaaagtggtgtcaactgaagtatcgcaaggagaacttgcggtcactcttc
cagtcaatgagagaataccaaggtgatcacatcacgaaggacccagatggttcacatcta
gaaaatatacgcattcttcaggaggaggacattgtaaggagattgaaacttcaatgttca
gaacagttcaatgattattacaaatttttcctgcttcactatggcaaagatcagctatca
atgcgtgaccacatgaaaaccaagcacaggaagcagagaaccgcaccaagagtcactagg
ggttttaagaagcatgatcatggtgaacgggaccaaaatggtgctggtattgaggataga
aagattcagaggaaagtagacgaatatgaggatacagaggatgcagatgaatatgagaag
agtggtaataataaaaacaagaaaggttcattgagagctaatgaggatgtagaaaaagag
gtggagacagaaatagaagaacaaatggaggaagaaaatcacgaatctgaggaagactct
gagtctttgagaagagttgttcgaaaacacgagtatgaacttctgaggaaggctggtatt
gagtcacttacaaataaatttggcctgactgctgagcagtttggtgagagcctacgtgat
aactatcagaggtttgatgttcaacagtggccagaggaccccacgagggaagctaagcag
ctcatttccaaaatatgcagcaccccagagcgagtccttgaagtagctgttaggatggtt
ggttggcagctgtcttgtgaacccttaataagacgcacagttagagaagtatactttaaa
cgtgccagaatcagtagcaggcccactcctcaggctgtgaacatcattgatgaacatcat
tcactttatgaacttaaatatttaaaggacaaaccagtcatagatctacagggtgaccag
ttccttcgtctcaaatgtggtgttgaagacaaactgttgaccgttagcttttccgatacc
attgaanggaatacaactaagacttacctggatgaaatgaagcagttgtactgccgagat
gagttttcccaagttgtccaagactggaatgatctgagaggccgggcaattgaatttgcc
tacaaacggattattgaagatcttaaaagggaattgtctcaacgtttgctccaggaatcg
aatgatcacgtgatggaaaagtgttgcagtaaactcaataactggataaaaattgcaccc
tataaccccggagacttttctggtgaagacgaagactgggatactgaaaaaggcttcaga
gtattttctattgcatttgttccagacctttcccaggcagcatttggctgttgcattgac
attgacggtgattgttgtgaatatattcgtctcccacatttactcaaacggttcaatgct
tacaatgaaagagacgctttggctaaaaaaagtgatattaggcgcatgcaggattttatt
actcgctgtaaaccacatgttatttccatatgtggacagtctcgagaatctctcatggtt
aaggaagacctgattcaaattctcaaagatctagaaaaacaagaaaggtttcctaaaata
aatacagaaatcattgacaatgacctagctcacatatatgcaatgtccaagaaaggagaa
gcagatttccttgattaccctccactattacggcaggctatatcagttggtcgacgtgtt
caggatccattgattgaattctcgcagctatgtaatgctgatgaagaattacttaacatt
aagttccacagtctacaggaccaattaaactctaaggaactactcgatgctctgtacact
gaattcgtcaactgcactaatgaagttggggtcgacctaaatcgtgccgtagcacatcca
tatacacagaacttggtccagtttgtttgtggtttaggaccacgaaaggccaaccttctt
attaggaatatgaagcagaataatcatcgtctagaaaacaggaaccagttagttgtgaac
ttccacatgggtccaaagatattcattaactgtgcaggatttattaaaatagacaccaat
gctttgggtgacagtgataattatatagacgttctagattctaccagaattcatccagaa
gcttatgactgggctcgaaaaatggtttttgatgcactagattatgaagatgaaaatgga
gaacctgcagaagccttgaaggaaatcttagaaactccagagaaacttagtgagcttgat
cttaaagcttttgataatgaactacagaaccagggctttggcaagaagaacacaactttg
tatgacattaaacgtgagctgaaacatagatacagagattttaggtcaacctacaggtct
ccgacgccagaagaagttttcagtatcttgactaaggagtcgccggagactttttatgtg
ggtaagcttgttcaggctaccgtcacaaattttattcatcgcaaactccgtcgagatcaa
gtggataatgcctatcctgtcagaactgaaggtacaggtctttggcagtgtcccttctgt
ctaaaaaattattttcctgaactaagtgaagtgtggaatcactttgatgccggtgatttc
ccagttccagtcataggaattaaagttcgattagataacggaatatcaggtttcatcagt
ataaaaaacttgtcggataaaacggtgataaatccagcagaaagagtgagacgagattgt
ttagttctttgtcgtatcatgaaaatttatcctgataaattttcagttgatctcacgtcg
cgatcatcagaccttcaggaccgaaataacaagtggaaggctccaaaagacacttattat
gaccatgaggctgaagaaaaagatttaaatttggacaagcaaaagatggaccaaaaagca
agtcggtatcaaaagcgagtgattgttcatccctccttcagaaacattgactataatgaa
gctgaaaaggttatgcagcaattggagcaaggagaggtgatcatacgaccatcaagtaaa
ggcattaatcatctcactgctacctggaaagttacaacaggaatctgtcagcatatcgat
gtgctggaacaagctaagcaatatgacttttctcttggtcagaaactatggattggaaat
gaagaatttgatgatttggatgaaattattaccagacacattttacctatggctagtaac
gtaagacaaatacttgaacacaaatattacaaggagtctatcatggacaataaggagaaa
gcagcagagttactgaaagaggagaaaaggaaaaatccgaagtcgatcccgtatatcttt
tcgcctaggaaggatttgccaggaaagtttctcatgtcatatttaccaagagcgaaagtg
atccatgaatttgtaactgtcaatcctgaaggtttcaagtttaggcagaaaatgcaattc
ctaaatcttgccggactacttaattggtttaagcagaatttccatagaacattatcaggt
gcaacaccaagaatgatgtccacacgcacgtcatacatgggcaactcaacaccatatctt
atgggtgttaatgccttcacaattcagaaagtggctcagagcctaaatccacgaatgctg
cataacctctcccaggcagccactaatacaccttgtagtgtcaacacttctggaggattc
tctcatggtttctcaaaatacgctaatactccttacacaccttcagatcagacaccattc
atgacaccgtatgccaccccggggccatccaccatacctcgctattatggatcacagaca
cttgtgctatcaaacccaactccctcacatcaatatgaggcagcatattctcagcatatg
atgaccaaagtaactggacacacacctcacccatctcgctgtggatccccagttagcagc
caagtaaaaaaaaaggattgcaaaatggcagcagatgctttggtggacgttaacggtgcg
actaatggacataatagacgaaggatgacgccacaatgcaatgctggaaaccagtcaaca
cctcgcaatactaatcaatataatgtccgcacacctcgccatactcctcaatatgatgac
cacacatctcgcaatactccacgatataataactaaacacctcgccttttccatggttaa
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integrated database retrieval system
