Procambarus clarkii (red swamp crayfish): 123764801
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Entry
123764801 CDS
T07930
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123764801 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcla03400
]
123764801 (Msh6)
DNA repair and recombination proteins [BR:
pcla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123764801 (Msh6)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
123764801
NCBI-ProteinID:
XP_045608905
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Position
48:14210564..14238945
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AA seq
1322 aa
AA seq
DB search
MIVVRKWLVDVGSVRQQEQYRESPAPLLLREHRYSGLTMSKQASIFTFFSKSPGQNKSQH
KGSPKNTVKLKGNDIASMDMVWAKLDGHPWWPALVCENPGDKSFLRNGQIHVQFFDNPPS
RGWVKEGFVKPYCLPGKNGIPTYKDPTWLKAIEEAKGAEQLSKEDRTLLLVEMLPSDEEP
MEDDEEDTDVSKENVDLNISKNKNNSSKKAMNGEPETKRRRIILHSDSESEDDYKPGKDD
VESDEESHSSAVDENEISEPEIVSDIDSPVKAPSNKRKKPAASSRCNLNSSLSSSPSTSK
TPARAPSTPKISDGTKSKLSLFAAKETPSQVQESSEDWPFLKYPWLQPENIRDREKRSPN
HKDYNPRTLYVPESFLNQQTPALRQWWDIKSQHYDTVLFFKMGKFYELFNMDATLGVQEL
GLIMMKGEKAHVGFPEIAYGRYSSTLIDKGYKVARIEQTETPEMMEKRCKTLSRPSKFDR
VVRREVCQISSKGTRVYSFLDGEASEISTSYLLALTERPVRGTGDGSEFGVAFIDTSLGI
FHVGQFTDDRHVSRLSTLMAHYPPAQILFERGRLSQKTQKLVNSAVPSSLRENLAPEKEF
WTASKTLSFLAEGNYFKDKEGDSKIRWPRTLKKMMDDSNSLGTTACPEYELAVSALGALT
YYLMDCCLEEQLLTIRKFEEYNPLDAMTPTGDKKSPSIPAFISGRHHMVLDGMTLGNLEV
FENTSGGTEGTLFDKLDCCSTPFGKRLLRKWICAPLCNPKSISSRLDAIEDLQKNPDVVE
EVTALLKSLPDLERVLARIHSQGLNLSSKHPDSRAIFFEDVKYNKKKVVDFLAGLNGFKT
TLQILKAFKGISSTLQSSLLRKCVTKTKDGGNFPSLSDALQFFDNAFDHEEAQKEGKIIP
SSGVDTEYDGACEQIKITKDKLSDYLKDQCRYFGTKVMYWGNDKKRYQLEVPEHVCRKAG
NDYELLSQKKGYKRFGTPTTKEFLADMITAEEHRDAALNDIARRIFHQFDEHHKKWEAVV
QCVSVLDVLISLLRYSEAANTVKPEIIMPEDSVQPFLEIRDGLHPCVTATFSGDEFIPND
LVVSGDSKDAHCPMVLVTGPNMGGKSTLMRQTALICLMAQLGSFVPASSCRLTPIDRVFT
RLGASDRIMMGESTFFVELAETSSIIQHATQHSLVLVDELGRGTATYDGTAIASAVVDAL
VERKCRTLFSTHYHSLVDDFANVKHVSLGHMACMVEGENEDDPSQETITFLYKFAKGACP
KSYGFNAARLADLPEEVIRRGSQKACDFEKFNLKKQTFSKVFKTKFQMKNLRETVQKIRN
LQ
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgatagtggtaaggaaatggttggtagacgtgggcagtgttaggcagcaagagcaatac
cgcgaaagtcccgcgccgctgctgctccgtgagcaccgctactcgggattaacaatgtcg
aaacaggcttctattttcacattcttctctaaatcccctgggcagaataagagccaacat
aaggggtcaccgaagaacactgtcaagttaaaggggaatgatattgcatcaatggacatg
gtctgggcaaagttggatgggcacccatggtggcctgcacttgtgtgtgagaacccaggg
gataaatctttccttcggaatggtcagatacatgtacagttttttgacaacccaccttct
cgaggatgggttaaggaggggttcgtgaagccatactgtttaccaggaaaaaatggtatc
ccaacatacaaggatccaacatggcttaaggctatagaggaagctaagggagcagagcag
ctgtccaaagaagataggactttgttacttgttgagatgcttccttcagatgaggaacca
atggaagatgatgaggaagatactgatgtaagtaaagaaaatgttgaccttaatataagc
aagaacaaaaataacagcagtaaaaaagctatgaatggcgagcccgagacgaagcgaaga
aggataattctccattcagactctgaatccgaggatgactacaagccaggaaaggatgat
gttgaaagtgatgaagaatcacatagttctgcagtggatgaaaatgaaatatcagagccc
gaaattgtgtcagacatagattctcctgtcaaggcaccttcaaataagcgcaaaaagcca
gcagcatcaagtcgatgcaatttgaattcatccctttcatcttctccatcgacgtcaaaa
actccggcacgtgcgccttcaactccaaaaatatctgatggcaccaaatccaagctatca
ttgtttgctgctaaggagactccttcacaagtccaggaaagctcagaagactggcctttc
ctgaagtatccttggttgcaaccggagaacatacgtgaccgggagaagcgttcacctaac
cataaggattataatccaaggactctttatgttccagaaagctttcttaatcagcagact
ccagccttgagacagtggtgggatataaagtctcagcattatgatactgttttgttcttc
aagatgggcaagttttatgagctatttaacatggatgccacactgggagtgcaggagttg
ggccttattatgatgaagggagaaaaggctcatgtaggctttccagaaattgcatatgga
cgttattcctcaactttgatagacaagggctataaagttgcacgaattgaacagacagaa
actccagaaatgatggagaagcgttgcaaaactttgagtcgtccatcaaagtttgaccgt
gttgtgcgacgtgaagtgtgccaaattagtagtaaaggaactcgcgtgtacagcttcttg
gatggagaagcctcagaaatctctacctcctacctcttggctcttactgaaaggcctgtc
cgaggaactggcgatggcagcgagtttggtgttgccttcattgataccagcttaggaata
tttcatgtgggccagttcacagatgaccgtcatgtgtcacggttgagcactttaatggct
cattatccgccagctcagattctcttcgaacgagggcgactttcacaaaaaacacaaaaa
ttagtaaattcagccgtgccttcaagtttacgagagaatctagctccagagaaggagttc
tggacagccagcaagacccttagcttccttgcagaaggaaattacttcaaagataaggaa
ggcgattccaaaataaggtggcctcgaactctgaaaaaaatgatggatgacagtaactcg
ttgggcactacagcttgccctgagtatgagcttgcggtgtctgctcttggtgcactcacg
tattatcttatggactgctgtctggaggaacagctactcacaattcgcaagtttgaagaa
tacaaccctcttgatgcaatgactccaacgggagacaagaaaagcccatctattcctgca
ttcatcagtggaaggcatcatatggtgcttgatgggatgacacttggcaacttagaggta
tttgagaatacttcaggtggtactgagggaactctctttgacaagttggactgctgctca
actccatttgggaagagattgcttcgtaagtggatttgtgctcctctctgtaatccaaaa
agcatcagtagccgtttagatgctatagaagatctgcaaaaaaatcctgatgtagtggag
gaggtaacagccctcctcaagagtttgcctgatctagagagggttcttgccagaatccac
tctcagggcttgaaccttagctcaaagcacccagatagtagagctatattttttgaagat
gtcaaatataataaaaagaaagttgttgactttcttgctggactaaatggatttaaaact
actcttcaaattctgaaagcttttaaaggcattagctctactctccagtcgagtttgctg
cgcaaatgtgtgacgaaaacgaaagatggcgggaattttccaagtttaagtgatgctcta
cagttctttgataacgcttttgatcacgaagaggcacagaaggaaggtaagataatccct
agcagcggtgttgatactgaatatgatggagcctgcgagcaaatcaagataacgaaagat
aaactttcagattatctcaaggatcaatgcagatattttggtaccaaggtaatgtactgg
ggtaatgataagaagagatatcaactggaagtgccagagcatgtatgtagaaaagctggt
aacgactatgagttactgagccaaaagaaaggttataagcgattcggtacaccaaccact
aaagaattcttggcagacatgattactgcagaggaacaccgtgatgcagcacttaatgat
attgcacgtaggatattccatcaatttgacgaacatcataagaaatgggaagcagttgtg
cagtgtgtatcagtactagatgtcctgatctctctattacgttattctgaggctgctaat
actgttaaaccagaaatcatcatgccagaagatagtgttcagcctttcttagagatcaga
gatggccttcatccatgcgtgacggcaacatttagcggggatgaatttattcctaacgat
ttggtggtgagtggtgacagcaaagatgctcattgtcccatggtgctggtcacaggacca
aacatgggtggcaaatcaacacttatgagacagactgctcttatatgtcttatggcccag
ttgggatcatttgtccctgcaagctcatgccgactgacaccaatagatcgagtgtttacc
agacttggtgcatctgatcggattatgatgggggaatcaacattctttgttgagctggca
gagacttcttccattatccaacatgctacccaacattcacttgttttagtagatgaacta
gggcgtggtacagcaacctatgatggtactgcaatagcatctgcggtagtggatgcactg
gttgagcgtaaatgtcgaacactcttttcaactcattatcactccttagttgatgacttt
gccaatgtaaaacatgtttctcttggtcatatggcatgtatggtggaaggggaaaacgaa
gatgatccatcacaagaaacaattactttcctttacaaatttgctaaaggtgcatgccca
aaatcctatgggttcaatgctgcacgtttggctgacctacctgaagaagttatacgccgg
ggtagtcagaaagcatgcgactttgagaaattcaaccttaaaaagcaaactttttcaaag
gtattcaaaacaaagtttcaaatgaaaaacttaagagaaactgttcagaagattcgtaat
ttgcagtga
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