Procambarus clarkii (red swamp crayfish): 123765774
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Entry
123765774 CDS
T07930
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04140
Autophagy - animal
pcla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123765774
04148 Efferocytosis
123765774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcla04131
]
123765774
Membrane trafficking [BR:
pcla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123765774
Hops complex
123765774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
zf-C3HC4_2
zf-RING_2
TPR_Vps41
zf-C3HC4
zf-rbx1
zf-C3H2C3
zf-RING_5
zf-RING_UBOX
PQQ_3
zf-ANAPC11
Beta-prop_EML_2
zf_RING_Vps8_fungal
zf-Nse
Motif
Other DBs
NCBI-GeneID:
123765774
NCBI-ProteinID:
XP_045610461
LinkDB
All DBs
Position
63:8008062..8075144
Genome browser
AA seq
1204 aa
AA seq
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MAALLQWRKFGFFDIKANIDGGKLAEVVKDADVTCAAAGRGHVYVGDTNGWVHSLTRQLK
LDSFQAHDRAVNSITAFDNTSVIITVADGKDGPSEIKVWAPDKPDVHGHPACLRTLCPDP
RPSTSGSRSTPHQALQVPRVTAIAVNPNLSLMAVGFSDGAIMLYRGEVSRERGSKHRVLL
TVSSGITSLHIRHTPRSTHLFVTSHTNIYCVNCTVRDKETTVELDSVGCQRGCATLADGR
HEHYFLVARPDAIYSYTSDSRGSCYVFEGEKTMVAWFRGYLIVASTDKGVPPTRVSDRTI
TIYDLTNKLVALSTKVQGLASVVGEWGGLYLVTAEPSLIHMSEKDLHSKFQLLFKKNQFD
IAISLAKTQCCDQEEVAEILRQYGDWLYSKGNHPVAMDQYIKTIPHLEPSYVIRKYLDTQ
HIHNLTTYLQALHRSGSATADHTSLLLNCYTRLRDTQQLDEFIMSKNGAVDCDVELGVRV
CRSAGYFDHALALAAKHGLHHHHLAILIDDKKDYVAALRYISTLDLEEAKGNVLRYGSVL
LSHVGDETTELLIRLCTDYKPSNTPIIKEGSLDGYLTPEEPVYADPEDFEYMLVGHSEQA
ITFLEKMATIPGKLSVKLYTTLLAEYLHQYSLAPEGQEQVALGEKVMELLRSTDNEYCRD
HALLLCDKLKFHDGKLLLWEQAGMYEELLAWYAELGDMDSMLAVCSRKSHQHPRLWCSAL
KLITSSSSLVPPDQQHLMTCLSNIEQKGLLPPLEVVDQLATSPHISLGQVREYLLRVVST
HSATLAAEAARTQQYSQETSRMRDTIRELRTSATQFTATKCNICNNDLELPSVHFLCRHS
FHQHCFESYSESDSDCPVCLPENKKMLDVIKAQETHRSQHDQFHEQLERSADSFSVVADY
LGRGVFTHLHSLAAMYPSLNTTKNQSNVVPRAVAVKVAQDVADSASEARIRATEIRPKHG
KGVVVPEPEGRLRALERVNQGPVGVGGEGRLRMSERRGQGVMESEPESRLRTDGRSGLSQ
FMPESALKVTSTPSEGRVRQESPSAILTSPTEGRLRLGVTSSVAVPAAESRIRSNENMRM
GGGNNSKCSPSLHDHITGSPARTAGRDLKQDSPIESISTSLSNINISRPKTLSDNPFQDE
TVDANNPFSDDFETEQLENDPFAGDYDESKNPFAEDSPESKCSDEKNPFAKDDYDSQLNP
FGES
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggcggccctcctccagtggcggaagtttggattcttcgacattaaggccaacattgat
ggagggaagttagccgaggtagtgaaggatgcagatgtcacctgtgcagccgcaggccgt
ggacacgtttacgtaggggacacaaatggttgggtccacagcctcacgcgtcagcttaaa
ctggattctttccaagcacatgaccgagcagtgaactccatcactgcctttgataatacc
agtgtcattatcactgtagctgatggcaaagatggcccatccgagatcaaagtctgggct
ccggacaagccagatgttcatggtcatccagcatgtttacgcaccctctgtcctgacccg
aggccctcaacgtctgggtcgaggtcgacaccgcatcaggcactccaggtgcccagagtc
actgctatagctgttaaccccaacttgtccctaatggcagtgggcttttctgacggggca
attatgctttatagaggagaagtgagtagggaacgaggcagcaaacaccgtgttctgttg
acagtctcgagtggcatcacgtctcttcacatacgccacacaccacgctccactcaccta
tttgtaacgtcccacaccaatatttattgtgtcaactgcactgtcagggacaaggaaact
acagtggaactggactcggtaggttgtcagcgaggctgtgcgaccctggctgatggtcgt
cacgagcattactttctcgtggccaggcctgatgccatctacagctacacaagtgacagt
agaggatcatgctatgtgtttgaaggagagaagacaatggtggcttggttcagggggtac
ctcatcgttgcatccactgacaagggagtgccacccaccagggtcagtgaccgaaccatc
acaatatacgatctgaccaacaaactagttgccttaagcactaaagttcaaggcttggca
agtgttgtaggagaatggggaggcctctaccttgtcactgccgaaccctctttgattcac
atgtccgagaaagatcttcatagcaagtttcaacttctgttcaaaaagaatcagtttgat
attgctattagcctggccaagactcagtgctgtgatcaggaagaagtagcagaaatatta
cgtcagtacggagactggctgtatagcaaggggaaccacccggtcgcaatggatcaatac
atcaagactatcccacaccttgaaccctcatatgtcattagaaagtatctggatacccaa
cacattcacaacttgacgacttacctgcaagctctgcacaggtctggatcagcaacagct
gaccacactagtctcctcctcaactgttacacgcgcctgcgtgacactcagcagctggat
gaatttataatgagcaagaatggtgctgtagactgtgacgttgagctgggggtgcgagtg
tgtcgcagtgcgggctacttcgaccatgctctggccctggcagctaaacacggtcttcat
catcatcatttggcaatcctcatcgatgacaaaaaagactatgtagcagctttaaggtat
atttcaactctggatttagaagaagccaaagggaatgttctgcggtacgggtcagttctg
ctgagtcacgtaggagacgagaccaccgagctgctgatcaggctctgtacggactataaa
cctagtaacactccaatcatcaaagagggatctttagatgggtacctgaccccagaagag
ccagtatacgctgatcctgaagactttgaatacatgctggtgggccacagcgaacaagct
atcacgttcttggagaagatggcgaccataccgggcaagctctcggtcaagttgtacacc
accctgcttgctgagtatcttcaccagtacagtcttgctcctgaaggtcaagaacaagta
gctttgggcgagaaggtgatggagctattacgcagcacagacaatgagtactgtcgtgac
cacgcactcctgctctgtgacaagctcaagtttcatgatggaaagctccttctgtgggag
caagctggaatgtacgaggagttgctggcctggtatgctgagctcggcgacatggacagc
atgctagccgtttgttctcggaagtcacatcagcatcctcggctctggtgttcagcctta
aaactcataacgtcctcttcatctctggtccctccagatcagcaacacctcatgacgtgt
cttagcaacatagaacagaaggggttactacccccgttagaagttgttgaccagctggcc
acctctccacacatcagcctgggccaagtgagagagtacctgctgagagtggtctctacg
cactctgccactctggccgctgaggccgctcgcactcaacagtactcgcaggaaacttct
cgcatgagggacaccatccgtgaactgcggactagtgctacccagtttactgctaccaag
tgcaacatctgcaacaatgacttggagctgccatctgtacacttcctctgtagacactcc
ttccaccagcattgcttcgagagctatagtgaaagtgactctgattgccctgtatgttta
cccgagaacaagaagatgctggatgttatcaaagcacaagagacacaccgcagccaacac
gaccagttccatgagcagttggaacgatcagcagattcgttctctgtggtggcagactac
ttgggacgaggagtgtttacccatcttcattccctagcggctatgtatccttcccttaat
acaacgaagaatcagagtaatgttgtacctcgtgcagttgccgttaaagtagcacaggat
gtggcagactctgcctcggaggcccgcatcagggctactgagatccgtcccaagcatggc
aagggggtggttgttcctgaacccgagggccgactccgggcactagagagagtgaaccag
ggaccagtcggtgtcggtggggaaggtcgactgagaatgagtgaacgtcgcggtcaggga
gtgatggagtctgaaccggagagccggttgcgaacagatggccgcagcgggttatcccaa
tttatgccagagagtgccttaaaggttactagcactccttcagaaggcagagtccgccag
gaaagcccaagtgcgattttaacaagtcctacagaaggccggctaagattgggagtgact
tcaagtgtggcagttcctgcagctgaaagtagaataagatccaatgaaaatatgagaatg
ggaggaggtaacaacagtaagtgtagtccatcgctccacgatcacatcactggatcccca
gcacgtaccgcgggcagagatctcaagcaagactctcccattgagagcatatcaacatcc
ctctcaaacataaacatctcaagacccaagacactctctgacaacccatttcaggatgag
actgtggatgcaaataatcctttctctgatgactttgagactgagcagctagagaacgac
ccttttgcaggtgactatgatgaatccaagaacccatttgctgaagattctcctgagagt
aagtgttctgatgagaaaaatccatttgccaaagatgattatgactctcagttgaatccc
tttggtgaatcctag
DBGET
integrated database retrieval system
