Procambarus clarkii (red swamp crayfish): 123766239
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Entry
123766239 CDS
T07930
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123766239
03016 Transfer RNA biogenesis [BR:
pcla03016
]
123766239
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123766239
Spliceosome [BR:
pcla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123766239
Transfer RNA biogenesis [BR:
pcla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123766239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Motif
Other DBs
NCBI-GeneID:
123766239
NCBI-ProteinID:
XP_069175425
LinkDB
All DBs
Position
92:9938182..9986608
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AA seq
729 aa
AA seq
DB search
MQRLFHFSEMGVLPEIAKAVEEMNWTLPTDVQNEAVPLILGGGDVLMAAETGSGKTGAFC
LPILQIVWESLKDIQLGKTSKVTKEISPLWLMNFFDRDXPDGLRCQSRDPKTWQGARCTK
GVTGKGKYYYEAVVSDEGLCCVGWATPQAALDLGTCXFGFGGTGKKSNCKQFDDYGESFG
LRNVIGCYLNLDAMEMHYSKNGTDLGKAFTLRSEFKNAVFHPAVVLKNAEMSFNFGATEF
KHPPKAGYVAVSQASKDCTVSSGVKGGGDKPQKLQNNAPHAVIIEPSRELAEQTLKQVQM
FRKHLDNPVVRDLLVVGGIPVKEQIAALNACVDIVCGTPGRLEDLINTGQLSLQSCKFFV
LDEADGLLKQGHERLINNIYNSIPKITSEGKRLQMVVCSATLHSFEVKRMAERLMHFPTW
VDLKGEDAVPETVHHVVVTIDPRTDSSWSNLRRHLQTDGVHVKDGVRPGNNTPETLSEAV
KLLKGEYCIKAIDTHKMDQALIFCRTKLDCDNLERYFNQIGGGANNRGNPYSCVCLHGDR
KPNERKANLQKFKDGGVKFLICTDVAARGIDVGGLPFIVNVTLPDEKSNYVHRIGHVGRA
ERMGLAISLVAAVPEKVWYHGEWCSTRGRNCFNTRLTTEGGCCVWYNEPQYLADIEEHLG
VTIQQVDQEMKVPVDEFDGKVIYGEKRANVDSKVVWTPNLVRQVKRAFRIVRRDEDGHNC
VCLFKLLTL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggttatttcatttttcagaaatgggtgtactcccagaaatagctaaggctgta
gaagagatgaattggacgttgccaacggatgtccagaatgaggcagtcccacttattttg
ggaggtggggatgtgctcatggcagctgaaacaggcagtggcaagactggtgctttctgt
cttcccatcctacaaattgtctgggaatcacttaaggatattcagcttggcaagacttca
aaagttactaaagaaatatctcctctctggttgatgaacttctttgaccgtgacnnacct
gatggcttgcggtgccagtcacgggatcctaaaacatggcagggtgcccgttgcaccaag
ggtgtcactggcaagggaaaatattactatgaagccgttgtgtcggatgaagggttgtgt
tgtgtcgggtgggcaactcctcaggcagcattagatcttggaacatgtnaatttggattt
ggaggcactggaaaaaagtctaattgcaagcagtttgacgattatggtgaatcttttggc
ctcaggaatgtcattggttgctatctcaacctggatgccatggagatgcattacagcaaa
aatggcactgatttaggtaaagctttcacattacgaagtgaattcaagaatgctgtcttc
catccagctgtagttttgaagaatgcagagatgtctttcaattttggtgcaacagagttc
aagcacccacctaaagcgggatacgtagcagtgtctcaggccagcaaggactgtactgtg
agctcaggtgtgaagggaggtggagacaagccacaaaagcttcagaacaatgctccgcac
gctgtcattattgagccttcaagagaactcgcagaacagaccctaaaacaggttcaaatg
tttcgtaagcatctagataatccagtggttcgtgaccttcttgttgttggtggtataccc
gtgaaggagcaaatagcagcactcaatgcatgtgtggatattgtttgcggtactccagga
cgcttggaagatcttattaatacaggacaactctctctccagtcttgcaaattctttgtg
ttggatgaggctgatggacttcttaaacaggggcatgagcgtctcatcaataacatctac
aactccatacccaaaatcacatctgaaggcaagagactccagatggtggtctgttctgcc
accctacattcctttgaagtgaagcgcatggcagaacgtttgatgcacttcccgacctgg
gtagatcttaaaggggaagatgctgtgcccgagactgtccaccacgttgttgtaaccatt
gatcccagaacggatagtagctggagcaatcttcgtcgccatctgcagactgatggcgtg
catgttaaggatggcgtacgacctgggaacaatacacctgagacattaagtgaggcggtg
aagctgctgaaaggagagtactgcattaaggctattgacacacacaaaatggatcaagca
ctaatattctgccgcactaagttggattgtgacaatttagagcgctattttaatcaaatt
ggaggaggggccaataacagaggcaatccatattcgtgtgtgtgtctccatggtgaccgc
aagcctaatgaacgcaaagcgaatctccaaaaatttaaggatggtggagtgaagttcctt
atatgcactgatgtagctgctcgaggaattgatgttggaggactgccatttatagtcaat
gtgacactgccagatgagaagagcaactatgttcatcgtattgggcatgtgggtagagca
gagagaatgggtctagctatctcccttgttgctgctgtgccagagaaggtgtggtaccat
ggagagtggtgttcaactcgtgggcgtaactgttttaacacgcgattgacaacggaaggt
ggttgttgcgtttggtacaacgaaccacagtacctagctgatattgaagagcacttggga
gtgaccatccagcaggtcgatcaagaaatgaaagttccagttgatgaatttgatggcaaa
gtgatttatggtgaaaagagagccaatgttgattcaaaggtggtctggacacccaatttg
gtcagacaggtgaagagagcatttaggatagttcgaagagatgaagatggtcacaattgt
gtttgcctcttcaaactcctgacattatga
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