Procambarus clarkii (red swamp crayfish): 123766411
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Entry
123766411 CDS
T07930
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123766411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123766411
03009 Ribosome biogenesis [BR:
pcla03009
]
123766411
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123766411
Spliceosome [BR:
pcla03041
]
Complex A
U1 snRNP components
U1 related factors
123766411
Complex B
123766411
Ribosome biogenesis [BR:
pcla03009
]
Eukaryotic type
Pre-60S particles
Helicases
123766411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
REC1
Motif
Other DBs
NCBI-GeneID:
123766411
NCBI-ProteinID:
XP_045611450
LinkDB
All DBs
Position
62:complement(15780478..15795871)
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AA seq
640 aa
AA seq
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MSSYRNRRSRSRSRSRSRDRRRSREDWGSHGGWSPAGSARPSLKGRQPGERLRKPRWDLS
KLTPFEKNFYQPTPTVLNRPAYEVEKYRNEKEITLRGKNIPNPIQYFSDYNFMDCVMAEI
KRQGYEQPTPIQGQGWPISLQGRDFVGIAKTGSGKTLGYILPAIVHINHQPYLERGDGPI
ALVLAPTRELAQQILTVAQDYGASSKTRSTCVFGGAPKGPQIRDLERGAEICIATPGRLI
DFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRKL
AEDFLKDYIQLNVGSLSLSANHNILQIVDVCQEMEKDTKLRQLLEEIMAEKKSKILVFAE
TKRKVDDLTRRMRREGWPAMCIHGDKSQQERDWVLNEFRSGRAPILVATDVAARGLDVDD
VKFVINYDYPSCSEDYVHRIGRTGRSDKTGTAYTFLTADNGKQARDLIEVLKEANQVVNP
RLYEIMDMGRGGGKGRNRWRGRDDDRRGFGRDRDRGRVGGGGGGGRNGYSNGNGYGTSEG
LGRFNQFRGGGNSSAVPNGVGAGRTRLNGPPPLMGSGSVKPSMSQAANQNQFNGPQRPSV
RNVGASMAVGMFNQAATVAGTAGGLGIMGTMPSALNWPRQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatacagaaatcgcaggtctcgctcacgttctcgttctcgctcgcgtgatcgc
cgccgcagtagggaggactggggttcacacggagggtggagtccagctggtagtgcacga
ccatcattgaaagggaggcagccaggtgaacgtcttaggaagccgaggtgggacctgtcc
aaattgactcccttcgagaagaacttctatcagccaacacctacagtactcaatcgtccc
gcttatgaagttgaaaaatacaggaatgagaaagaaattacactccgtggaaaaaacatc
ccaaatcccatccagtactttagtgattataatttcatggactgcgttatggccgagatc
aaaagacagggctatgaacaaccaacaccaattcaaggtcaaggatggcctatttcactt
cagggaagggactttgttggtattgccaagactggttctggtaaaacgttaggatacatc
ctgccagcaattgtgcatataaatcaccaaccatatttagagcgaggcgatggtccaatt
gcactagttctagcccccaccagagaacttgcccagcagatcctaacggttgcccaggac
tacggggcatcctcaaagactcgatcaacgtgtgtgtttggaggagcacccaagggacca
cagattcgtgatcttgaaagaggggccgagatttgtattgcaacccctggccgtcttatt
gatttccttgaagcaggcaagacaaatcttcggcgtacaacatacttggtactagacgag
gctgaccgcatgctggacatgggttttgagccgcagatcagaaaaatcgtagaacagatt
cggcctgatagacaaactcttatgtggtctgcaacttggcctaaggaggtcaggaaacta
gcagaggacttcttgaaggactacatccagctgaatgttgggtcactctctctctccgct
aaccataatattcttcagattgtcgatgtttgccaagaaatggaaaaggataccaaactc
cggcagcttcttgaagaaatcatggcagaaaagaaaagcaagatcctcgtgtttgctgaa
acaaaaaggaaagtcgacgatttgaccaggcgaatgagacgtgaagggtggccagcaatg
tgtattcatggagataaatcacaacaggaaagagactgggttttaaatgaatttcggtct
ggaagggcaccaattttggtagccacagatgttgctgctcgagggctagatgtggatgat
gtcaagttcgtgatcaactatgactacccgtcatgctctgaagattatgtccatcgcatt
ggtcgaactggaagatcagacaagactggtactgcatacacgttcttaacagcggacaat
ggcaaacaggctagggatttaatagaagtgctgaaagaggcaaatcaagtagtaaatcca
cgtctttatgaaatcatggatatgggacgtggtggtggcaaaggacgtaatcgttggagg
ggccgtgatgatgacaggagaggttttggacgcgatcgtgatcgcggtcgagttggtggt
ggtggtggtggaggaaggaacggctacagcaatggaaatggctatggtacgtctgaaggg
cttggaagatttaaccagtttagaggtggaggcaatagcagtgctgtgcccaatggggtg
ggtgcaggccgaacgcgtctgaatggtcctcctccactaatgggttctggttctgtgaag
ccttcaatgagccaagcagctaaccagaaccagtttaatggcccccaacgtccatccgtc
cggaacgtgggagctagcatggccgtgggcatgttcaaccaggctgccactgtagctggt
actgctggtggcttgggcataatggggaccatgcctagtgcactgaactggccgcgtcag
tga
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