Procambarus clarkii (red swamp crayfish): 123767328
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Entry
123767328 CDS
T07930
Symbol
Hpr1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03013
Nucleocytoplasmic transport
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123767328 (Hpr1)
09122 Translation
03013 Nucleocytoplasmic transport
123767328 (Hpr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123767328 (Hpr1)
03041 Spliceosome [BR:
pcla03041
]
123767328 (Hpr1)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
123767328 (Hpr1)
Spliceosome [BR:
pcla03041
]
Complex C
Other components
EJC/TREX
123767328 (Hpr1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123767328 (Hpr1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Myb_DNA-binding
RNase_E_G_Thio
DncV_C
RecC_C
Motif
Other DBs
NCBI-GeneID:
123767328
NCBI-ProteinID:
XP_045612876
LinkDB
All DBs
Position
74:complement(13378713..13391715)
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AA seq
695 aa
AA seq
DB search
MADGGLNFQRIFTKVQSTLPRCIEDADALSITNIFSTKITETTKHCVEAAIRNYVTKKVI
DGEATDLATITAITSVCIDLVRHELSLPTLPVLVLTDSFDMLTIKQCELLFSFVESNVGV
WKEDTFFAPCKTSVLRMCNDLLRRLSRSQNTVFCGRILLFLARFFPFSERSGLNLVSEFN
LENVTTFTNVETTDMEDDDDEEKGEETRLRLDYTLYTKFWSLQDFFRNPVQCFQKAPWKM
FTMYCGDVLEAFKSFKLDNVQSSGSGGAHLTRTLSEPTHSEDSSSLQFQVDQYFAKYLTN
QKLLDLQFSDANFRRYVLLQILILAQYLTSNIKFKHMNSASSRETLTEDQLAWVKKTEEL
VYTLLEETPPDGPVFVNTVKHILKREVVWSEWKNEGCPEFKKPEGYEKLKAKLNGKGEEE
KEDEDSRSTKKLRQKRKVGDMIRDADSKNKFSMGNVEMSRLWNLNPNNLAACKMLERDFV
PALETYFTPAIEQLSPKSELKEKDRLVNDSNFGWRGLRLLACRSPHFFTHSASPIATLPE
YLTTMIKKLAKELPSQLTADIKVEDDDDKEEEKVIPVLEQNDGVKEDEEDMEEDGEEERP
EVKAITEEEQKALAKNLDKLGQDKWKLLAKKLGFVDDEIEFIEKDKAAKAGSVESQAAFM
LKLWVENEGDEANKDSLLYTLGGMKLTAIADDVFT
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcggcctgaattttcagcgaattttcaccaaagttcagtcaactttgcca
cgctgcattgaagatgccgatgcactgtcaatcacaaacatcttttccactaaaataact
gagacaacaaagcattgtgttgaggctgcaatccgtaactatgtaactaagaaggttatc
gatggggaagcaacagacctggccaccatcacagctattacatcagtatgcatagactta
gtgcgtcatgagctaagcctcccaaccttgccagttttggttctcaccgactcctttgac
atgctgactatcaagcaatgcgagttacttttttcctttgttgaaagcaatgtaggtgtt
tggaaggaagatacattctttgcaccatgcaagaccagtgttcttcgcatgtgtaatgat
cttttgcgtcgactttcacgttcgcaaaacacagtgttttgtggtcgaattcttctcttc
ttggcaagattctttccattctctgagagatcaggactaaatttggtatcagagtttaac
cttgagaatgttacaacctttaccaatgtggagactacggacatggaagatgatgatgat
gaagaaaaaggagaagaaactcgactacggctagactacacattatataccaaattctgg
tcacttcaagatttcttcagaaacccagttcaatgctttcaaaaggcaccttggaagatg
tttactatgtattgtggagatgttctagaagcatttaaaagtttcaagttggataatgtt
cagagcagtggaagtggaggagcccatctgacccgtacattatccgagccaacacattca
gaagatagttccagcttgcaattccaagtggaccagtattttgccaagtacttgacaaac
cagaaattgcttgatcttcagttttctgatgcaaatttccgccgttatgttctactgcag
attctaattttggctcaatacctcacctccaatatcaagtttaaacatatgaattctgca
tcttccagggagacattaacagaagatcagttagcatgggtaaaaaagacagaggaactt
gtgtacacactcctcgaagagacccctcctgatggtcctgtgtttgtgaacactgtcaag
cacatactgaagagagaagtagtatggagtgagtggaaaaatgaaggctgcccagaattc
aagaaaccagagggttatgaaaaattaaaggcaaaactaaatggcaaaggagaggaggaa
aaagaggatgaagattctaggtcaaccaagaaattgcgtcagaaacgaaaagtaggagac
atgatccgagatgctgattcaaaaaataaattctctatgggcaatgttgaaatgtctcgg
ctgtggaacctgaacccaaataaccttgcggcatgtaagatgctcgaacgagattttgtg
cctgcgctggagacgtactttactcctgccattgaacaacttagtccaaagtcagaattg
aaagaaaaggatagacttgtcaatgacagtaactttggatggcgaggtttgcgactcttg
gcctgccgctcaccccacttcttcactcactcagctagtcctattgccacattacctgaa
tatcttaccaccatgatcaagaaactagcaaaggagctaccttcgcagcttacagcagat
attaaagtcgaagatgatgatgacaaagaagaggaaaaagttatccctgtgttggagcaa
aatgatggagtgaaggaggatgaggaagatatggaggaggatggtgaggaggagcgacct
gaggtcaaggccatcactgaggaagagcagaaagcacttgccaagaacttggacaaacta
gggcaagataagtggaagctcctggccaaaaaactaggttttgtagatgatgagattgaa
ttcatcgagaaggataaagcagccaaggcgggcagtgtggagagccaggcagcatttatg
ctgaaattgtgggtggaaaatgaaggtgatgaagccaacaaggacagtcttctgtatacc
cttggtggcatgaagctgacagctattgctgatgatgtattcacttga
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