Procambarus clarkii (red swamp crayfish): 123768081
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Entry
123768081 CDS
T07930
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123768081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123768081
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123768081
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
OB_HELZ2
DNA_pol_B_exo1
Motif
Other DBs
NCBI-GeneID:
123768081
NCBI-ProteinID:
XP_069163184
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All DBs
Position
59:34335654..34454762
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AA seq
988 aa
AA seq
DB search
MGIVERRLKVFYKKTKKGNIIKIVREHYLRDDVWCGLEGCGMCEMDQPNLEMAYSNDSTL
VRQPHILLIDTNVALHQIDVLAYESMTNIIIPQNCNGEVRHRSLPIYKRLRDLIEKPSKK
LYVFTNEHHSECYVEREENESANDRNDRAIRIACWWYKQHFRTHNQKIVLITNDFGNRDK
AREMELEAYTMYEYVSSLTDRPGLLDIVAKVEEERDEDASHQRYFYPPHRSLEKIRAALK
SGKLSQGVLKTSRTNFLEANVMVEGLERTILIQGRLNLNRALHDDTVAIEIFPEDQWSAP
STVVIDQEKQEEEKGACSEDENGDEATLKEEQALLASGKGEGERQPTGCVVGIIRRKWRQ
YCGIIKKNEIAESMRHLFIPADKKIPFIRIETRQPDLLYDKRIIVAIDSWPRDSRNPKGH
FVRVIGTVGDKDAENEVILLEHDCPYTKFSESVLNCLPKMPWVVTEKDEAEREDLRHLDI
CSVDPIGCTDIDDALHCRRLPNGNFEVGVHIADVSHFIRPHTALDKEAQNRSTTVYLTNR
RIDMVPDLLSSNLCSLRGNVDRFAFSVIWEITPQAEVLSSRFCKTIIKSRGELSYEQAQQ
RIDDPNMKDDLTKTLRNLNMLAKQLKNKRINAGALVLASMEVKFHVDPDTDTVVDIVAKQ
HLETMSMVEEFMLLANVTAAETTLQSFPDCALLRRHPAPPPSNFEPLLLAAKSQNINLDV
TSNKTLAKSLDNNTRENNPFFNSMLRIMTTRCMMQALYFCSGTREPPEYYHYGLATQTYT
HFTSPIRRYADIIVHRLLAVIIEADRTYPDLLDPKKLADLSQHINYRHKMAQYAARGSAV
ITAIASLRGKVSEFDSYVLFLHKNAIQVLAPTIGQQLTLFLDKGGNKDKEAKIGKPQQVS
SQAMEVEEETPAVEFEFNEQELFVKCNDVIIRPFDHLRIQVSVDASDVQHQRVVCKLIHP
VIPGFSVPSLKREGEDGMDKGVKKLKKK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggtatagtggagaggagactcaaggtcttctacaagaagaccaagaagggcaatata
ataaagattgttcgtgagcactatttgcgagatgatgtttggtgcggactggagggatgt
ggtatgtgtgagatggaccaacccaatctggagatggcttacagcaatgacagtactttg
gtccgccagcctcacatcctcctcattgacaccaatgtggctctccatcagattgatgta
ttggcttatgagagcatgaccaatataataattccccaaaactgtaatggagaagtaagg
caccgatcactacccatctacaagcgactcagagacctcattgaaaaaccctcaaagaaa
ttgtatgtcttcacaaatgagcaccacagtgagtgttacgtagagagagaagaaaatgaa
tctgcaaatgatagaaatgaccgagctatacgcattgcctgctggtggtataagcagcac
ttccgaactcacaatcaaaaaattgtcctcatcacgaatgacttcggcaatcgtgacaaa
gctcgagagatggaacttgaagcttacacaatgtatgaatacgtgtcaagtctgacagac
aggccaggattactggatattgtggcaaaagtagaagaggaaagagatgaagatgccagt
catcaacgctacttctatccacctcatcgctccctggaaaaaatccgtgcggcacttaag
tctggtaaactttctcaaggagtattgaagacgtcacgaactaactttcttgaagccaat
gtaatggtagaaggtttagaaaggacaatactgatccagggtcgtctaaacctgaaccgt
gcattacatgatgatactgtagctattgaaatatttcctgaagatcagtggtcagcccct
tcaactgttgtaattgatcaagagaagcaagaagaggagaaaggagcatgtagtgaagat
gaaaatggtgatgaagcaactctaaaagaagagcaggctcttctggcttctgggaaagga
gaaggagaacgtcagccaacgggttgtgttgttggcattattagacggaaatggagacag
tattgcggtatcattaagaagaatgaaattgccgaatcaatgcggcacttgttcatccca
gctgataagaagattccattcatacgtattgagacaagacagcctgatttgctgtatgat
aaaagaataattgttgccattgattcttggccgagagattcgagaaaccctaagggtcac
tttgttcgtgtgattgggacggttggagacaaagatgccgaaaatgaagtgattctttta
gaacacgattgtccttataccaagttttctgagtcagtcctgaactgccttccaaagatg
ccatgggtagtcacagaaaaggatgaggcagagcgtgaagatttaagacatttagatatt
tgctctgttgatcctattggctgcacagacattgatgatgctctgcactgtcgaaggctt
ccaaatggtaattttgaggttggtgtccacatagctgatgtgtcgcacttcattcgaccc
cacactgccttagacaaggaagcacaaaaccgcagtactacggtgtacctcaccaaccgt
cgtattgatatggtgccagatctcctcagcagtaacttgtgttccctgcgtggtaatgtt
gacaggtttgctttctctgtcatatgggaaataacaccacaggcagaagttttatcatcc
cgattttgcaagacaatcatcaagtctcggggagaactaagctacgagcaggctcagcag
cgtattgatgatccaaatatgaaagatgatcttaccaaaactctcagaaatctcaacatg
ttggctaagcagctaaagaataagaggatcaatgctggagcattggttttggctagtatg
gaggtcaaattccatgttgatcctgacacggacactgtggttgacatcgtagcaaagcaa
cacttggagacaatgagcatggtggaggagttcatgttgctcgccaatgtaacagctgca
gaaactacactccagagcttcccagattgtgcccttcttcgtcgacatcctgcacctcct
ccatcaaactttgagccattgttgttagcagcaaaaagtcaaaatattaatttagacgta
acgagcaacaagaccttggccaagagtctggacaacaacactcgggagaacaatccgttc
ttcaacagcatgttgcgtataatgacgacacgatgcatgatgcaggctctctacttctgc
tctggtactcgggagcctccagaatattatcactatggactagccacacaaacctacact
cactttacttcacccatcagaaggtatgctgatataattgtacatagactgcttgcagtc
atcattgaagcagataggacctacccagacctcttggacccaaagaaattagcagatctt
agtcagcacatcaattatcgtcacaaaatggctcagtatgcagccagaggatcagcagta
attacagccattgcttctctgagaggcaaggtgtcagaatttgattcatatgtgttgttt
ttgcacaaaaatgccattcaagtgttagcgccaacaattggccagcaactgactttattc
ctggacaaaggagggaacaaggataaagaagcaaagataggaaagccacaacaggtgtct
tcacaagcaatggaagtggaggaggagacaccagcagtggaatttgaatttaatgaacag
gaactctttgtgaaatgcaatgacgtgataattcgtccctttgaccatcttcgtatacaa
gtgagtgtggatgcctctgacgttcagcatcaacgtgttgtctgcaaacttattcatcct
gtcatcccaggattttcagttccatctctaaagcgagaaggagaagatggaatggataag
ggggtaaagaagttgaaaaagaaatag
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