Procambarus clarkii (red swamp crayfish): 123768187
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Entry
123768187 CDS
T07930
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04140
Autophagy - animal
pcla04142
Lysosome biogenesis
pcla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
123768187
04140 Autophagy - animal
123768187
04148 Efferocytosis
123768187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcla04131
]
123768187
Membrane trafficking [BR:
pcla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
123768187
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
TPR_Vps41
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
123768187
NCBI-ProteinID:
XP_045614549
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Position
59:complement(22039634..22062791)
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AA seq
876 aa
AA seq
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MHDAYEAIPILEKLPLQIEAVTAYDGNLVVGTRQGHLLMYTVTPGTTRRWDVALLCSNKN
FSRKPIVQVAVIPEHQIIVSLSDNVVSIHDLTAFNLPLLCTLTQTKGATAFDLDIKHHVS
LTGDAVVTVRLVVAVRRKLQLFYWKSRKFHQLREDLALPDVPRALTWCMEAIAVAFKHEY
WLVKLTGEQKELFATGRSQEPLITRMVDGEQLALAHDKETIFVDAEGNATCSYTLKWDEQ
PLCLAYNKPYLIAILSKTIEIKTAEPQITVQVLNLDKPRLLAVGQSSKGKSQVYIASASH
VWCLHNVPINQQIPQLLAEKQFGLALKLVDVWDEAEDAKTQMQKHIQHLQAIHLFCSKSY
PEAMKLFFTLNTDLPFVIGMYPDMVPEEYRSRLRYPYPIPALSGADLEQALQALVHFLLE
MRHQLSSTDSEAHVEDGVDNKFSPSAASLKSRNEKLQIIDTTLLKCYVQTNDSLVKPLLR
MRDSRVSIVEGERVLRHAHKYPELVLLLQTRGLHQRALQLLIRHAKRADSSLCGHHHTVT
YLQHLGPQHIDLIFEYGGWVLKSYPEDGLKIFIGDKSTSGEVDQLPRPKVLNFLKKTEKS
LVIPYLEHVIEEWGDTTPLLHNELIHQYRDIVTAPFQSSDPSNVEEEKARREPVREKLLK
FLNDSEYYTAATLLVHFPYDNLHEERAVLLGCLGQHYQALSIYTHTLRDTQAALNYCQKH
YTASGAGSEVYLTLLKLLVGPADTRSPSASPVKQQLAAKLDVQAVLQLLQNYLHCIDLGQ
ALKVLPDEVTLSLLKPFIHASFNLANTVCKQKQIARGLTQSVKLQTSEELNSCQRLKIML
SEYTYCAVCSKRFTKHSAFAWYPNGDIVHFSCQSQR
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcttacgaggccatccccatcctggagaagctgcccctgcagattgaggct
gtcactgcttatgatggtaatctggtggtgggaacgaggcaaggccacttgctcatgtat
acagtgacacctggcaccacccgtcgctgggacgttgcgcttctctgctctaacaaaaat
ttctcccgtaaaccaattgttcaggtggcagtaatacctgaacatcagattattgtctcc
ttatcagataatgttgtaagcattcatgatctgacggccttcaatctacctcttctgtgc
acattaacccaaaccaaaggtgctactgcctttgatcttgatattaagcatcacgtgtca
ctcactggggatgcagtagtgactgttcgtctggtggtggctgtgagacgcaagctccag
ctcttctattggaaatctagaaagtttcaccagcttcgtgaggatttagcactcccagat
gtaccacgagctttaacgtggtgcatggaagcaattgctgttgcatttaagcatgagtat
tggcttgttaagctgactggtgaacagaaagagttatttgctaccggtcgcagtcaagaa
ccactaattacacgaatggtagatggagagcagctagcattggcccatgacaaagagacc
atttttgttgatgctgagggcaatgccacctgcagctatactttaaaatgggatgaacaa
ccactttgtttagcatacaacaagccatacttgatagccatcttatcaaaaacaatagaa
atcaagactgcagaaccccagattactgtgcaagttctcaacctagataagcctagactt
cttgcagtgggccagtcttcaaaaggaaaaagtcaggtttacattgcatcggcgtctcac
gtgtggtgtctacataacgttcccatcaatcaacagatcccacaacttctagctgaaaaa
cagtttggattggccttaaaacttgttgatgtgtgggatgaagctgaggatgccaagact
cagatgcaaaaacacattcagcacctgcaagccattcatctcttctgtagcaagagctac
cctgaagccatgaagctgtttttcactcttaatacagatcttccgtttgttattggaatg
tatccagacatggtccctgaggaataccggagtcgactccggtatccataccccattcca
gcactaagtggtgcggacttagagcaggcactccaagcccttgttcacttcctgttagag
atgcgtcaccagctgtcaagcactgatagtgaggcacatgtggaagatggtgtagacaac
aagttctctccctcagccgcaagcttaaagtcccgtaatgaaaagctccagataattgac
acaacactgttgaagtgctatgtacagactaatgacagtcttgtgaagcccctgcttcga
atgcgagacagccgcgttagtatagtagaaggtgaacgtgttttacgccatgcccataag
tatcccgagttagttcttctgcttcaaacacgtggacttcatcagcgcgctctccagctt
ttgatccgccatgccaaaagagcagactcatctctgtgtggccaccaccacaccgtcact
tacctccagcatctaggcccccagcacattgatctcatttttgagtacggaggatgggtg
ttgaagtcatatcctgaagatgggctgaaaatttttattggtgacaagtccacatcaggt
gaagtggatcaactaccacgaccaaaagtgctgaactttctaaagaaaactgagaaatct
ctagtcatcccatatttggagcatgtaattgaagagtggggtgatacaactcctctgttg
cacaatgagctcattcatcagtaccgtgacatagtcacggctcccttccagtctagtgat
ccaagtaatgtagaagaggagaaagctagaagagaacctgttcgtgaaaaacttctgaaa
ttcttgaatgattctgaatattatactgcagcaactctattggttcatttcccatatgac
aatctccatgaagagcgagcagtgctactgggctgcctaggccaacattatcaggctctc
tccatctacactcacacactgagggacacgcaggctgctctgaactactgccagaagcac
tacactgcctctggagctggtagtgaggtatacttgacgctgctgaagctgctggtgggc
cccgcggacaccaggagcccctcggcatccccagtcaagcagcagctggcagcaaaacta
gatgttcaagctgttctgcaacttctacagaattatctacattgcatagatctgggccag
gcactgaaggtccttccagatgaagtaacattaagtttgctgaaaccatttatccatgcg
tcgtttaaccttgctaacactgtgtgcaaacagaagcaaatagctcgaggcctcacacag
tcggttaagcttcagactagtgaagagcttaattcatgccaaagattgaagatcatgtta
tcagaatatacttactgtgctgtgtgcagcaaaagattcactaaacacagtgcttttgct
tggtatccaaatggtgatattgttcacttctcatgccagagtcagaggtaa
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