Procambarus clarkii (red swamp crayfish): 123768266
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Entry
123768266 CDS
T07930
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123768266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123768266
03041 Spliceosome [BR:
pcla03041
]
123768266
03009 Ribosome biogenesis [BR:
pcla03009
]
123768266
03016 Transfer RNA biogenesis [BR:
pcla03016
]
123768266
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123768266
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123768266
Spliceosome [BR:
pcla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123768266
Complex C
U4/U6.U5 tri-SnRNP related factors
123768266
Ribosome biogenesis [BR:
pcla03009
]
Eukaryotic type
Pre-60S particles
Helicases
123768266
Transfer RNA biogenesis [BR:
pcla03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123768266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Helicase_dom4_arc
UPF0449
Motif
Other DBs
NCBI-GeneID:
123768266
NCBI-ProteinID:
XP_045614688
LinkDB
All DBs
Position
86:complement(15225279..15250676)
Genome browser
AA seq
1021 aa
AA seq
DB search
MACFGEDLFDFVEEEGVQRVEALPDIELVDEEENEKAAEELNQLLGKRIAEDDKKIKGVS
KKRRSQVETTQSELRLIEDLPRIAVHIIETFEACTHEVAVPPGEMYIPLQPAKEKPAKLY
SFILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYAVAMCLQNKQRVIYTTPIKALSN
QKYRDFSDEFTDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREAGWVIFDEIHY
MRDKERGYVWEETIILLPPTVKFVFLSATIPNASQFAQWVCYLHHQPCHVVYTDYRPTPL
QHYIFPAGGEGIYLSVDETGKFREDNFNTAMTILQNAPEQAHLKGKKGGVKDGSDCYKLV
KMIMERNFAPVIIFSFSKKECEAYALQVSKLDFNLAEEKQLVDEVFSNAISVLSEEDRQL
PQVVSVLPLLRRGIGIHHGGLLPIIKETIEILFGEGLVKALFATETFAMGLNMPARTVLF
TNVRKFDGQDFRWLTSGEYIQMSGRAGRRGKDDKGVVIMMVDEKLNTSVVKNLVQGNADP
INSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPALCDRVRTCETELETMNVP
RETEVESYYKIKQTIHNLKNERHAFITRPIYIMPFLQPGRLVYIKNNDDDFGWGVVLSYK
KQEDKKNPMEAPTITVDVILRVSEATAASKVTSDLKPPKPGEKSEPVVMSVMLKLIQEVS
AVRLKLPSDLKPLDQRVMVMKMVQEALKRVPENQFLLDPVKNMKIKDETLLEIVNKLEKF
SVRLESHRLHKEPDRDELYEKFSKKMEMKKELNNAEVDLKRAKSLLQMDELKCRKRVLRR
LGYATSQDVIERKGRVACELSAADELLITEMLFNGLFNNITAAQTCALLSTFVCDEKSSE
MPKLGEELSGPLRQMQDMARRIARVSHECKLEIDEENYVEQFRPFLMDVVYDWCNGSSFM
ELCTKTEIYEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFSEGVKLLKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcttcggggaagatctttttgacttcgtggaggaggagggcgtgcagcgggtg
gaggccctgccggacattgagctggtggacgaggaggagaatgagaaagcagctgaggaa
ctcaaccagttattaggaaagcgaattgctgaagatgacaagaagattaagggagtatcc
aagaagcgtcgctctcaagtggagacaacacagtctgagcttagattaatagaagatttg
ccaagaatagctgtacatattatagagaccttcgaagcatgtacacatgaagtggctgta
ccccctggagaaatgtatattccacttcaacctgccaaagaaaaaccagcaaagttatat
tcatttatactggaccctttccagaaagaagccatattatgtattgataataatcagtcg
gtattggtttccgctcacacatcggctggtaaaacagtcgttgccgagtatgcggttgcc
atgtgtttacagaacaagcagagagtcatatatacaactcccatcaaggctttgagtaat
cagaaatacagagattttagcgatgaattcactgatgtgggtctgttgaccggtgatgtg
actatcaatccaaatgcctcttgtctcatcatgaccacagaaattttacggtccatgctg
tatcgaggctccgaggtgacgagagaagctggttgggttatctttgacgagattcactac
atgagagacaaggagagaggatacgtgtgggaagagaccattatccttctaccaccaacg
gtcaaatttgtctttctctctgcaactattcctaatgcaagccagtttgcccagtgggtt
tgttaccttcaccatcagccatgccatgtggtgtacacagactaccgtccaactcctctc
caacactatatcttccctgctgggggcgaaggaatctatctctctgttgatgaaactggc
aagttcagagaagataattttaatacagcaatgacaattttgcaaaatgcaccagaacag
gcccatttaaaaggcaagaaaggtggagtgaaggatggttccgattgctataaacttgtg
aagatgataatggagcgcaactttgcaccggtcatcatcttcagtttctccaaaaaggaa
tgtgaggcctatgctctccaggtgtccaagttggatttcaatttagccgaggaaaaacag
ttggtggatgaagtgttcagcaatgctatttcggtcctttctgaggaggacagacaatta
ccgcaggtggtttcagttctgcctctactacgacgaggcataggcattcatcatggaggt
ttgttgcccattatcaaggagacgatagagatcttgttcggagagggtttagtgaaggcc
ctttttgcgactgaaacatttgccatgggtcttaatatgcctgccagaactgtgctcttc
actaatgttcgtaaatttgatggacaagactttcgatggttgacatcaggagaatacatc
cagatgtctgggcgtgcaggtcgacgagggaaagatgacaaaggtgtcgttataatgatg
gtggatgagaagcttaacacctcagttgtgaagaacttggtgcagggcaatgctgatccc
atcaactctgcattccatctgacgtacaacatggtgctgaatttgttgcgtgtggagcag
ataaacccggaatatatcttggagagatcattcttccaattccaaaattactcatccatt
ccagcactttgtgaccgtgtgaggacttgtgaaacggagttggaaacaatgaatgtgcca
cgagagactgaagtggaaagttactacaagattaagcagactatacacaacctcaagaac
gagcgccatgccttcatcactcgacccatatacatcatgccattcctacaaccggggaga
ctggtctatattaagaataatgatgatgacttcggctggggggtggtgctgagctacaaa
aaacaggaggacaagaagaatcccatggaggctccgacaataactgttgacgtgatattg
cgtgtatcagaggcaacggctgcttcaaaggtgacttcagatttaaaacctcctaagcca
ggtgagaagagtgagccagtggtgatgtcagtgatgttgaagctgattcaggaagtgtct
gcagttaggctgaagctgccgagtgacctcaagccccttgaccagcgtgttatggtcatg
aagatggtgcaggaagccttgaagagggttccagagaaccaatttctactcgacccagtg
aagaacatgaagataaaagatgaaacactcttagagattgtgaacaagcttgagaagttt
agcgttcgtcttgagtcacacaggttacacaaagagcccgaccgagatgagttgtacgaa
aagttctcaaagaaaatggagatgaaaaaggaattaaacaatgctgaggtagacctaaag
agagcaaagagtctcttgcaaatggatgaactgaagtgcagaaaacgtgttctacgtcgc
ttgggttatgccacctcccaggatgtgatcgagcgtaagggcagagtagcttgtgaactg
tcagccgcagatgaactcctcataacagagatgctcttcaatggcctcttcaacaatata
acggctgctcagacatgtgccttactcagcacatttgtctgtgatgaaaagagttctgaa
atgcccaaacttggagaagagttgtcgggaccattaagacagatgcaggacatggctcgt
agaattgcccgtgtcagtcatgaatgcaaattggagattgatgaagaaaactatgttgag
cagtttagacctttcctgatggatgttgtatatgactggtgcaatggttcttcgtttatg
gaactttgcaccaaaacagagatctatgaaggaagcattattcgagctatgcgtcgtctg
gaggagctcctacgccagatgatccaggctgccaaagccattggcattgacttggaaaat
aagttctctgaaggagtcaagctattaaagagagatattgtatttgcagcaagtctctac
ttgtag
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