Procambarus clarkii (red swamp crayfish): 123768476
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Entry
123768476 CDS
T07930
Name
(RefSeq) ATP-dependent RNA helicase Ddx1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123768476
03016 Transfer RNA biogenesis [BR:
pcla03016
]
123768476
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123768476
Spliceosome [BR:
pcla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123768476
Transfer RNA biogenesis [BR:
pcla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123768476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Motif
Other DBs
NCBI-GeneID:
123768476
NCBI-ProteinID:
XP_045615012
LinkDB
All DBs
Position
35:complement(29603550..29620775)
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AA seq
736 aa
AA seq
DB search
MAAFEEMGVLPEIAKAVEEMDWTLPTDVQNEAVPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWESLKDIQLGKTSKVTKEISPLWLMSFFDRDAGMAVTPDGLRCQSRDPKTWQGARC
TKGVTGKGKYYYEAVVSDEGLCRVGWATPQAALDLGTCKSGFGFGGTGKKSNCKQFDDYG
ESFGLRDVIGCYLNLDAMEMHYSKNGTDLGKAFTLRSEFKNAVFHPAVVLKNAEMSFNFG
ATEFKHPPKAGYVAVSQASKDCTVSSGVKGGGDKPQKLQNNAPHAVIIEPSRELAEQTLK
QVQMFRKHLDNPVVRDLLVVGGIPVKEQIAALNAGVDIVCGTPGRLEDLINTGQLSLQSC
KFFVLDEADGLLKQGHERLINNIYNSIPKITSEGKRLQMVVCSATLHSFEVKRMAERLMH
FPTWVDLKGEDAVPETVHHVVVTIDPRTDSSWSNLRRHLQTDGVHVKDGVRPGNNTPETL
SEAVKLLKGEYCIKAIDTHKMDQALIFCRTKLDCDNLERYFNQIGGGANNRGNPYSCVCL
HGDRKPNERKANLQKFKDGGVKFLICTDVAARGIDVGGLPFIVNVTLPDEKSNYVHRIGR
VGRAERMGLAISLVAAVPEKVWYHGEWCSTRGRNCFNTRLTTEGGCCVWYNEPQYLADIE
EHLGVTIQQVDQEMKVPVDEFDGKVIYGEKRANVGSGYQTHVEQLAPAVQELACLETQTQ
VIYLKRQYGKEYPWTR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttttgaagaaatgggtgtactcccagaaatagctaaggctgtagaagagatg
gattggacgttgccaacggatgtccagaatgaggcagtcccacttattttgggaggtggg
gatgtgctcatggcagctgaaacaggcagtggcaagactggtgctttctgtcttcccatc
ctacaaattgtctgggaatcacttaaggatattcagcttggcaagacttcaaaagttact
aaagaaatatctcctctctggttgatgagcttctttgaccgtgacgcaggaatggctgtg
acacctgatggcttgcggtgccagtcacgggatcctaaaacatggcagggtgcccgttgc
accaagggtgtcactggcaagggaaaatattactatgaagccgttgtgtcggatgaaggg
ttgtgtcgtgtcgggtgggcaactcctcaggcagcattagatcttggaacatgtaaatcg
ggatttggatttggaggcactggaaaaaagtctaattgcaagcagtttgacgactatggt
gaatcttttggcctcagggatgtgattggttgctatctcaacctggatgccatggagatg
cattacagcaaaaatggcactgatttaggtaaagctttcacattacgaagtgaattcaag
aatgctgtcttccatccagctgtagttttgaagaatgccgagatgtctttcaattttggc
gcaacagagttcaagcacccacctaaagcgggatacgtagcagtgtctcaggccagcaag
gactgtactgtgagctcaggtgtgaagggaggtggagacaagccacaaaagcttcagaac
aatgctccacacgctgtcattattgagccttcaagagaactcgcagaacagaccctaaaa
caggttcaaatgtttcgtaaacatctagataatccagtggttcgtgaccttcttgttgtt
ggtggtatacccgtgaaggagcaaatagcagcactcaatgcaggtgtggatattgtttgt
ggtactccaggacgcttggaagatcttattaataccggacaactctctctccagtcttgc
aaattctttgtgttggatgaggctgatggccttcttaaacagggccatgagcgtctcatc
aataacatctacaactccatacccaaaatcacatctgaaggcaagagactccagatggtg
gtctgttctgccaccctacattcctttgaagtgaagcgcatggcagaacgtttgatgcac
ttcccgacctgggtagatcttaaaggggaagatgctgtgcccgagactgtccaccacgtt
gtcgtaaccattgatcccagaacggatagtagctggagcaatcttcgtcgccatctgcag
actgatggcgtgcatgttaaggatggcgtacgacctgggaacaatacacctgagacatta
agtgaggcggtgaagctgctgaaaggagagtactgcattaaggctattgacacacacaaa
atggatcaagcactaatattctgccgcactaagttggattgtgacaatttagagcgctat
tttaatcagatcggaggaggggccaataacagaggcaatccatattcgtgtgtgtgtctc
catggtgaccgcaagcctaatgaacgcaaagcgaatctccaaaaatttaaggatggtgga
gtgaagttccttatatgcactgatgtagctgctcgaggaattgatgttggaggactgcca
tttatagtcaatgtgacactgccagatgagaagagcaactatgttcatcgtattgggcgt
gtgggtagagcagagagaatgggtctagctatctcccttgttgctgctgtgccagagaag
gtgtggtaccatggagagtggtgttcaactcgtgggcgtaactgttttaacacgcggttg
acaacggaaggtggttgttgcgtttggtacaacgaaccacagtacctagctgatattgaa
gagcacttgggagtgaccatccagcaggtcgatcaagaaatgaaagttccagttgacgaa
tttgatggcaaagtgatttatggtgaaaagagagccaatgttggctcaggttatcagacc
cacgtagaacagcttgctccagctgtacaggagttggcatgcctggaaactcagacccag
gtaatctatcttaaaaggcagtacggcaaggagtatccatggactcgatag
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