Procambarus clarkii (red swamp crayfish): 123768931
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Entry
123768931 CDS
T07930
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123768931 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcla03021
]
123768931 (Taf5)
03036 Chromosome and associated proteins [BR:
pcla03036
]
123768931 (Taf5)
Transcription machinery [BR:
pcla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123768931 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
123768931 (Taf5)
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123768931 (Taf5)
STAGA complex
123768931 (Taf5)
TFTC complex
123768931 (Taf5)
SAGA complex
123768931 (Taf5)
SLIK complex
123768931 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_WDR19_1st
eIF2A
Beta-prop_ELP1_1st
DUF6570
Motif
Other DBs
NCBI-GeneID:
123768931
NCBI-ProteinID:
XP_045615722
LinkDB
All DBs
Position
64:complement(5196901..5212154)
Genome browser
AA seq
756 aa
AA seq
DB search
MIVNMSDSGGPTYASLTPANPTIINGLAGVDLQTGQQLTTHQAVMNNTEHTMVNMVNTVG
VATAGVQTLPQHNMTTVIPAVAHQQPLPDLTPDTMVNHAVHVDRNTLVAVLQFLKKNNFK
RAEELVRQEANFFETVEDSKQGIGGDAEVSSVLSAYKSEGDPAEYEDAYKSLQSFIEKSL
DAYKHEVSLVLYPVFVHMYLELVYNGHEKVAKSFLEKMGNRQEDCYREDVHKLSLVTLRD
HMTGYQIMDNFRSSQFTVRMSRDTYSHLKRYLTEYGGGPVPRIIHDRLYLDVYEGVPRSR
AQVLATAGAQEGEVPKQVNKSKLYYGLLKEPELPSLHMEEEEGEEEGDKPKKKKPKKDAL
QKSKKNDPNAPPTNRIPLPELREIDFVEKAKAFRDALKRVTLSKDTLPSICFYTFLNATG
NITAVDISDDSSLLAYCTSDSQVRVQSITPSKLRCMKSAEQLNDIDKDADDVLVRMMDDR
TAEPVRTLLGHSGPIYACCFSPDRNLLLTGGEDGTIRLWSMQTWTCLVVYKGHVFAVWDV
RFSPHGYYFASGGHDRTGRLWATDHHQPLRIFAGHFSDVDVVQFHPNSNYVASGSSDRSI
RVWDCLNGNCTRVLTGHKDVIDTLAFSPCGRFLASAGGDKRVLVWDLAHGHLIAEMASHT
STVYTIAFSRDCNILASGGMDNCVKLWDFSRVLEDNHEDDINVSNNPDIKRCSESLLLGT
FPTKNTPVLATHFTRRNVLLAAGPFDGTVYSQQAAT
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaaacatgtcagactccggaggcccaacttacgctagcttgaccccagccaac
ccaaccatcatcaatgggttggctggggtggatttacagacgggtcagcagctgacgacg
caccaggccgtgatgaacaacactgaacacaccatggtgaacatggtgaacactgtaggg
gtggcgacggcaggcgtccagaccctccctcagcacaatatgactactgtcatacccgct
gttgctcaccagcaaccccttcctgacctaactccagacaccatggtcaaccatgctgtc
cacgtcgacagaaatacattagtggccgttttacaatttttgaaaaagaataatttcaag
agagcagaagaacttgtgaggcaggaggcaaatttttttgaaactgtagaagactccaag
cagggtattggtggtgatgctgaagtgtctagtgtgctttcggcatataagagtgaggga
gacccagcggagtatgaagatgcatacaagagtcttcaatcatttattgaaaagagcttg
gatgcatataagcatgaagtctccctggttttgtacccagtgtttgtacatatgtattta
gaacttgtgtataatggccatgaaaaggtggccaaatcattcttggagaagatgggtaat
aggcaagaagactgctatcgtgaggatgtccacaagctgtctctggtaacattgagggac
cacatgacaggatatcagattatggataattttaggtcaagtcagtttacagtaaggatg
tcccgggatacatattcacacttgaagcggtatctaacagaatatggtggagggccagtg
cctcggataattcacgatagactgtacttggatgtgtatgaaggtgttcctcgaagtcgc
gctcaagttctggcaactgcaggagcacaagagggggaagtgcctaaacaagttaacaaa
tccaaattatactatggactactgaaggagccagagctgcccagccttcatatggaggag
gaggagggagaagaagaaggggacaaaccaaagaagaaaaaacccaaaaaagatgcactt
caaaagagcaagaagaatgatcctaatgctccacctaccaatagaataccattgccagaa
ctacgtgaaattgattttgtggaaaaggccaaagcattcagagatgctctgaagagagtg
acgttaagtaaggacactcttccctcaatatgcttctacaccttcttgaatgcgacaggg
aacattacagctgtagacatatctgacgactccagtctcctagcatactgtacatcagac
tcacaagtgcgagtgcaaagcatcacgcctagtaaattgcgctgtatgaaatctgcagag
cagttgaatgacattgacaaggatgctgatgatgttttggtgcgtatgatggacgataga
acagcagaaccagttcgtactctacttggacattctggaccaatatatgcctgctgcttc
agtcctgaccgtaacttgcttctcacaggtggagaagatggcacaatccgtttatggagt
atgcaaacgtggacgtgtctagttgtgtacaaaggacatgtctttgctgtatgggatgta
cgattctcacctcatggttactactttgcctctggtggacatgatcgaacaggtagatta
tgggcaacagatcaccatcagcctctaagaatatttgcgggacatttctcggacgtcgat
gttgttcagttccacccaaatagcaattatgtagcgtctgggtccagtgatcgcagtatt
cgagtttgggattgtttaaatggaaattgtacaagagttttgaccggtcataaggatgta
attgataccttggcattttctccgtgtgggcgtttcttggcatctgctggcggagacaag
cgggttttggtatgggacttggctcatggccaccttattgcagagatggcatcacacaca
tcaacagtctataccatagcattctcaagagattgcaatattcttgcctcgggtggcatg
gacaattgtgtcaagctgtgggatttcagtcgcgttcttgaagataatcatgaagatgac
ataaatgtgtccaacaatccagatataaaacgatgcagtgaatctcttcttctcggcaca
tttccaacaaaaaatactccagttcttgcaacacactttaccagaagaaatgtgctgttg
gcagctgggccatttgatggtacagtatatagccagcaagctgctacatag
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