Procambarus clarkii (red swamp crayfish): 123768954
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Entry
123768954 CDS
T07930
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03022
Basal transcription factors
pcla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123768954
09124 Replication and repair
03420 Nucleotide excision repair
123768954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcla03021
]
123768954
03400 DNA repair and recombination proteins [BR:
pcla03400
]
123768954
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
123768954
Transcription machinery [BR:
pcla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123768954
DNA repair and recombination proteins [BR:
pcla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123768954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
TniB
Motif
Other DBs
NCBI-GeneID:
123768954
NCBI-ProteinID:
XP_045615780
LinkDB
All DBs
Position
LG56:complement(6840786..6848244)
Genome browser
AA seq
801 aa
AA seq
DB search
MAAQDSQIAMGKRHKFYEKGKKRRRDDGFSDEEENAELEGVPQASKQNVEERGDQSTPKD
QYGAFDYRSQMELREDHETRPLWIATNGHIFLESFSPVYKHAKDFLITIAEPVCRPENVH
EYKLTAYSLYAAVSVGLQTHDIIEYLKRLCKTTLPPGICQFIQSCTLSYGKVKLVLKKNR
YYVESDFPDVIQKLIKHQTIQECMLSPSEGIVSTEKQKSQAIMFTSHQAQLAGGSEDVKA
DGKTDGADANGVNKEGDGAVPEDITDFYDKIDKADEEEDEDTNLKTLSFEVNQDQIELLQ
KTCIGLDYPLLAEYDFKNDTVNEDIKIDLKPSAVLRPYQEKSLRKMFGNGRARSGIIVLP
CGAGKSLVGVTACCTVNKKALVLCNSGVSVEQWKQQFKMWSTATDDMICRFTSDAKDKPF
NAGILVTTYAMISHNQKRAYEAEQTMNWLKEQEWGIMVLDEVHTIPAKMFRRVLTIVQSH
CKLGLTATLVREDDKIADLNFLIGPKLYEANWLELQKEGFIAKVQCAEVWCPMTPEFYRE
YLMAKVSDQKIKLLCAMNPNKFRTCEFLIKYHENRNDKIIVFIDEVFALIHYAKTMQKPY
ICGKTGQKERMAIIQNFKLNPKVNTIFFSRVADTSFDIPEANVLIEISSQGGSRRQEAQR
LGRILRAKKGAIAENFNAFFYALLSQDTREMGYSRKRQSFLINQGYAYQVITPTQMVGME
DEQLHYTTREEKVQLLEQILAASESDMYEEGVSNERGMSGSQRRVGNMGSMSGADDSIYG
ERRRGAKKDSHHHFLFKKFRS
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccaagacagtcagattgcaatgggaaaaagacacaaattttacgaaaagggt
aaaaagcgccggcgtgacgatggattctctgatgaagaggagaatgcagaactggaaggt
gttccacaagcttctaaacaaaatgttgaggaacgtggagaccagtcaactcctaaagac
caatatggagcttttgactatcgatcacaaatggagctaagagaagaccatgaaacacgc
ccactctggattgcaactaatggccacatcttcttggaatccttttctcctgtttataaa
catgccaaagatttccttatcaccattgctgaacctgtgtgtcgtccagagaacgtgcac
gaatacaaattgacagcatactcgctctatgctgctgtaagtgttggtttacagacccat
gatattattgaatatctcaagagactttgcaaaacaaccttaccccctggaatctgtcag
tttatacaaagttgcacgctctcatatggaaaggttaaattggtgttgaagaaaaatcgg
tattatgttgaaagtgatttcccagatgttatccaaaaacttatcaaacatcaaaccatc
caggagtgtatgttgagtcctagcgaaggaatagtgagcacagagaagcaaaaatcccaa
gctatcatgttcacaagtcaccaagctcagctggcagggggttcggaggacgtgaaggct
gatggcaagacggatggtgctgatgctaatggtgtcaacaaggaaggcgatggagctgtg
cccgaagatattacagatttttatgataaaattgataaagctgatgaggaggaggatgaa
gatacaaatcttaagactttatcttttgaggtgaatcaagatcaaattgaattgctacag
aaaacatgcataggacttgattacccattgctggctgagtacgacttcaaaaatgatact
gtgaatgaggatattaaaatcgatcttaaaccatctgctgtgttacgaccctaccaggag
aaaagtttacgaaaaatgttcggaaatggacgtgcaagatcgggtataattgtgcttccc
tgtggagcaggtaaaagtttagttggtgtcacagcttgctgcactgttaacaagaaggct
cttgttttgtgcaactctggtgtgtctgtagaacagtggaaacagcagtttaagatgtgg
tccacagctacagatgatatgatttgtaggtttacctctgatgctaaagataagccattc
aatgctggtatcttggtgactacgtatgccatgatttcccataatcagaagcgtgcatat
gaagccgaacagacgatgaactggctgaaggagcaagagtggggtataatggttcttgat
gaagtgcatactattcctgccaaaatgtttcgaagagttctcacaattgttcaatcacat
tgtaagctgggactaactgcaacacttgttagggaggatgataagattgctgacctcaat
ttcctgattggtcctaagctctatgaagccaattggttggaactgcagaaagagggattc
attgcaaaggtgcagtgtgccgaggtatggtgccctatgaccccagagttttacagagaa
tatcttatggcaaaagtatcagaccaaaaaattaaattgctctgtgctatgaatcccaat
aaattcagaacatgtgaattccttatcaaataccatgaaaatcgcaatgacaagataatc
gtttttattgatgaagtgtttgcactaatccattatgcgaaaactatgcagaaaccttat
atatgtggaaagactgggcagaaagaacgaatggctattattcagaacttcaagttgaat
ccaaaagtgaatacaatattcttcagtcgagtagcagatacatcatttgatattccagaa
gcaaatgttttaattgaaatatcttcacaaggtggatctcggcgtcaggaagctcagaga
ttgggccgtattctgagagccaagaaaggagctatcgcagaaaatttcaacgcattcttt
tatgccctcttatctcaggacacacgagagatgggatactcgcgcaaaaggcaaagtttt
ttgattaatcaaggttatgcataccaagtgattacaccaacccagatggtcggcatggag
gacgagcagctgcactacacaacacgagaagaaaaagtccagctcctggaacaaatctta
gctgcttcggaatcggatatgtatgaagaaggtgtgtctaacgagcgtggcatgtctgga
tctcaacgtcgggtgggcaatatgggatcaatgtcgggtgcggatgactcaatttacgga
gaaagaagaagaggagcaaagaaagacagtcaccatcattttcttttcaagaagtttagg
tcatag
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