Procambarus clarkii (red swamp crayfish): 123770670
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Entry
123770670 CDS
T07930
Symbol
Not1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123770670 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123770670 (Not1)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123770670 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123770670 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_HEAT
CNOT1_1st
VPS13_N
TCP
XRN_M
NPR3
EIF4E-T
eIF-3_zeta
Tim54
EPL1
SpoIIP
Saf4_Yju2
Motif
Other DBs
NCBI-GeneID:
123770670
NCBI-ProteinID:
XP_069161902
LinkDB
All DBs
Position
56:complement(18453685..18580551)
Genome browser
AA seq
2874 aa
AA seq
DB search
MNLDSLTAALSHIGNLVASLTKKNLNSSVQEIQEVVCQFGGEAERHLYRVLIGHLEWSGP
QGVESHRPSPNNNNNNKDKETTCSVGIATLTWSSTSGGAGALLLQHLATTLPPTSFIANL
AIATANPPNPSKFIKPQWVTGVCKALRLSRLQEITLCLYLLQATNSEVRNQSTALLKAKL
PDLVRAYVDTESGDRELLELPTESLHLLLTQIVHLWRDPPAALLPQESRQAFICALQREF
PRSRVPVVLAPLLYSDSDIPMEKITQEQPANMAKNLLDGSLADLVLELGYSFCNTVEECR
NNLANFGVSSITPAAVAKVLGVMVRTHTGLPSEPIGLQNLNSPSSLWSDNKDKTPNNQSQ
SAPGNEVGLSGSGSLSGPHGWNVEVFIKGLLEVVPNLNVKEVIVKLDHKGFLLKDRQGLK
LLITALRCLLQGQGLRLDCFPVDCFYHQWKNSEEQLSLITQILKNSEIFCFVDFPCHLVS
TDCLKTLPELDNKEVATWKSVQLLEILLYLGEAGHFTAVKELFKFPIQHCPDILVLGLVQ
VTLPYTMLRQDLIASLIPIFLGNHPNAAIILHHAWHTQNHSSTIRQIIMHAMAEWYMMME
NDQTRLGRILDVAQDLKALSLLLNAQSFPFVVDLACLAYRREFLKLDKWLTDKIREHGEP
FISSCIKFLQRRCPQLMGGKEDIMPKSSQLPPETMATILVCLNACAMNVSQELSDTILQM
VQNCNLMNRPRTQQVGVIGFPGPGPTQSSEGPLGSIASSLSNLSLGAGVSSTIFPTAPSS
SMSLGNLGSLGTAPGSPGRPLGPSTTAGTSQSPLSSILPTLQLGPPHPAVGSQLATLPTS
SIIPSSLRSHSVQPSVAPARQMDISQIFDMPQMVSKEVEDEANSYFQRIYNHPPHPTLSI
EEVLDMLKKFHESTNKREREVYSCMLRNLFEEYRFFPTYPDKELFTTARLFGGIIEQGLV
EYMALGVALRYVMEALQKPHGSKMYYFGIVALDRFRSRLKEYPRYCQHLMAIQHFSEFPP
HLIEYIKYGTQSQEPPTRPSGVVLPPSINVSPSTPAPGTTTSVVTAAVTPVGVPPPPVVS
TVVSSVAKTITATTTTTTTAAITKPQAMPNNSSAVGSGKQQPTITTTNIETLLVATEKEE
KITPPPEHMQDKVAFIFNNLAQVNLPQKCEELREVVGEEYWLWVAQYLVMKRASIENNFH
TLYSLFLDQMKMNNVNAMVCRETLRNIKVLLRADKSAANYSDKSLLKNLGHWLGMLTLAK
NKPILHTDIDMKSLLIESYNKGLQEMQYVIPFVAKVMESCAKSRVFKPPNPWTMAIMNVL
AELHKEPEMKLHLKFEIEVLCNKLEINLEELKPANVLNDRDRIARLKPQLSQPGGSKRAE
STPLFPALQSFPSTPFMPKTSWSQAVPTGAVVDTTGVTVQSASVGATPTPPTVLPPHPST
TPTPIQAQQQPASEPRFIYSDINVTTLRGLDPHISVSVPQVCGIATNAQVKQLVRHAVDL
AVQEIVTAVMERSIKIAITTAEHIIKKDFALDPDESRMRAATHHMVRNLTAAMAMITCRD
YLATNITKNIKQGMLQAFSRSNQQQLPQQMEQMEQLAAALGQENVGIACAFIQKTAAEKA
VTEMDKRLSQEYEARKVARTEGRRYCDPVVLTYQAERMPELIRLKVGGVTPPQMAVYEEF
ARNIPGFLPITDQDTMFLAKPVPITSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQPSHTQAAPTPPTVLPPHPSTTPTPIQAQQQPASEPRFIYSDINVTTLRGLDPH
ISVSVPQVCGIATNAQVKQLVRHAVDLAVQEIVTAVMERSIKIAITTAEHIIKKDFALDP
DESRMRAATHHMVRNLTAAMAMITCRDYLATNITKNIKQGMLQAFSRSNQQQLPQQMEQM
EQLAAALGQENVGIACAFIQKTAAEKAVTEMDKRLSQEYEARKVARTEGRRYCDPVVLTY
QAERMPELIRLKVGGVTPPQMAVYEEFARNIPGFLPITDQDTMFLAKPVPITSQQQQQQQ
QQQQQQQQQQQQQQQQQQAATTAAAAAATTTTATAISHTSSFGSEESTAFLVLTERISAE
LEHTIQAFTTLAPTSPLIPMLHSLHEGLLLTRTNRDVHATQMLLRKCVENLMEGARELPN
EPELNQLALRFRDCHLIVLKAMADHRSYGVMWTSKNLTKCWAEARDDIKYNLDVGDWFIR
SNLFNLQLLDEHLARTLDDPRVHSYIPSLFVMQLVQVYLIDDPSNSVLRETDLQLTLEAL
VRMCHSRQAPEGLVSLIEALRMKHDLLSGERLTGGNSLSGSTNPLSAGPSLHFHSGVTQA
RDFQDPPALQEKTEVLLREWIQMYHSPTAGQGSASAFQHFVKQMNLHGILKTDDLITRFF
RICISMCRDLCVRSILEQGQGPSPTYVRSKCFQNLDAFVRLIALLVKHSGEATNPTTKIN
LLNKVLGLVCGIMIHDIESNGTEFQQLPYHRILIMLFLELNAPEAILESINLPVLMAFTQ
TLHLLRPSKCPGFAYAWLEIVSHRVFIGRMLAITPQQKGWSMYSMLLADLFKFLAPFLRN
AELAKPLTMLYKGTLRVLLVLLHDFPEFLCEYHYGFCDVIPPNCIQMRNLILSAFPRNMR
LPDPFTPNLKVDMLPEITVSPKIHTSVANLIQPPEFKKNLDSYLKNRTPVTFLSDMRTYL
QQVSNEPGMHYNMSVMNSLVLYVGMQAIAQINSKGLTPSMSTIAHSAHMDIFQNLGVDLD
TEGRYLFLNAIANQLRYPNSHTHYFSCTLLHLFAEANTEAIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPSFKFWSHEFVKCAPEIEKLFESVARSCMVQKVSTSREGEA
NT seq
8625 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactgctgctttgtctcatattggtaatctggtcgccagtttg
acaaagaaaaacctgaactctagtgttcaagagattcaggaagtggtgtgtcagtttggt
ggagaggcagagcgacacttgtaccgggtgctgattggtcacctggagtggtctggacct
cagggagtagaaagtcatcgaccctcaccaaacaataataataataataaggacaaagag
actacctgtagtgttggcatagccacacttacgtggtcatccactagtgggggggctggt
gcccttctcttgcaacatttggctactacacttcctccaacatctttcattgctaacctt
gccattgccactgccaacccaccaaatcccagcaagttcatcaagccacagtgggttact
ggagtgtgcaaggcactcaggctttcccgcttacaggaaattactctttgtttatacctt
cttcaagcaactaattcagaagttcgtaaccagtccacagcactcctcaaagccaaactt
ccagatcttgtacgagcttacgtcgacactgaatcgggggatcgggagttattggagcta
ccaacagagtcccttcatctattgctaacccaaattgttcatctgtggagagatccccct
gctgccctactacctcaggaatcgaggcaggcctttatttgcgctttacagcgcgaattt
ccccggtcacgtgtccctgtagttcttgcaccactactttactcagactcagacattcct
atggagaaaataactcaagaacaaccagccaacatggcaaaaaaccttctggatggttca
ttagctgatctagtcttagaattaggctacagtttctgcaatactgtggaagaatgtaga
aacaatttggccaactttggggtgagttccataaccccagcagctgtagccaaggtcttg
ggtgttatggtccgaactcacacgggtttaccatctgagccgattggacttcaaaatcta
aactctcccagttctctctggagtgacaataaagacaagaccccaaacaaccagtctcag
tcagcccctggtaatgaagtaggtttgagtggatcaggaagtctctctggccctcatgga
tggaatgtagaggttttcattaagggtctacttgaagttgtcccaaatctcaatgttaaa
gaggtgatagtaaagttggatcacaaaggatttttattgaaggacagacaaggtttgaag
cttctgatcactgcactcagatgtcttctccaaggccaaggattgaggttggactgtttt
ccagtagattgcttttatcaccagtggaagaacagtgaagagcaattaagtcttattact
cagattctcaagaattctgaaatattttgcttcgtagattttccttgccacttggtgtca
actgattgccttaaaactctgccagagcttgataacaaagaggtggcaacatggaaatca
gtgcaacttctagagattcttctttaccttggggaggctgggcattttacagctgtcaaa
gaattgttcaaatttcctatccagcattgcccagacattttggtgcttggcttggttcag
gtgacgcttccatacaccatgttgcgacaagaccttattgcttcactcattccaattttt
cttggaaatcacccaaatgcagcaatcatcctacatcatgcttggcacactcagaatcat
tcaagtacaattcgtcagatcatcatgcatgcaatggcagagtggtatatgatgatggaa
aatgatcagacaagacttggtcgcattctggatgttgcacaagatcttaaggctttatca
cttctcctcaatgcccagtcatttccttttgtagtggatttggcttgtttggcatacaga
cgtgaatttttaaagctggacaagtggctgacagacaagattcgtgaacatggagagccc
tttatatcctcttgcataaaattccttcagcgacgatgtcctcagcttatgggtggtaaa
gaagatataatgccaaagtcgtcacagctacctcctgagacaatggctactattcttgtt
tgcttaaatgcatgtgctatgaatgtctcgcaagaactgtctgacaccatattgcaaatg
gtgcagaactgtaatctgatgaacagacctcgcacgcaacaagtgggagtgattggattc
ccaggtcctggaccaactcagtcaagtgaaggaccattaggcagtattgcttccagtcta
agcaatttaagtcttggtgctggtgtgtcttccacaatcttcccaactgcaccctcatca
tccatgagtcttggaaatttagggtcacttggtacagccccaggttctccgggccgtcca
cttggaccctccactactgctggaacttcacagtctcctctttcttcaattttacctact
ctacagctgggaccaccacatcctgcagtgggatcccagcttgccactctacctacttca
tctattattccctcttcactaagatctcattcagtgcaaccaagtgttgccccggccaga
caaatggatatctcccagatttttgacatgcctcagatggtgagcaaggaggtagaggat
gaagccaatagctacttccagcgtatttacaaccaccctccgcaccctacactttctatt
gaagaggtattggatatgctgaagaagtttcacgagtctactaataagcgagaacgagaa
gtatattcctgcatgttacgtaatctgtttgaagaatatcgtttcttcccaacttaccct
gacaaggaactcttcactacagcaagactatttggtgggatcattgagcagggtcttgta
gaatacatggctttaggagttgcactgcggtatgtgatggaggctctccagaagcctcat
ggtagtaagatgtattactttggtattgtggccttagatagatttcgtagtcgtttaaaa
gagtatccacgatattgtcaacacctgatggcaatacaacatttcagcgagtttccacct
caccttattgagtatatcaagtatggaacgcagtcacaagagccacctacacgtccttct
ggtgttgtccttcctccgtcaattaatgtttctccaagcacacctgctccaggaacgaca
acatctgtagtgactgctgcagtaactccagtaggggttccccctccaccagttgtctcc
actgttgtgtcatcagtggccaaaacaattactgctacaaccaccaccactaccactgct
gcaattaccaaaccacaggcaatgcctaataattcaagtgcagttgggtctggcaaacag
caaccaactattactactaccaacatcgagacgcttcttgttgccacggagaaggaagag
aaaatcactccaccccctgagcacatgcaagacaaggttgccttcatcttcaataatctt
gcacaggttaacctgccacaaaaatgtgaagagttgcgtgaagtggttggggaggaatat
tggctatgggtggcacagtatttagtgatgaagcgagcatccattgagaacaactttcac
acactttattctttatttttggaccagatgaaaatgaacaatgtaaatgccatggtttgt
cgggagaccctcaggaatatcaaggtgcttctgagggctgataaatcggctgccaattat
tctgataagtctctcttgaaaaaccttggccattggttggggatgctcactttagccaag
aataaacccattctgcatactgatatcgacatgaagtcactgcttatagagtcttacaac
aagggattacaggagatgcagtatgtgattccttttgtggctaaggtgatggaatcttgt
gccaagagcagagtgtttaaaccacctaacccatggaccatggcaatcatgaatgtcttg
gctgaacttcacaaagaaccagaaatgaagctgcatctgaagttcgagattgaggttctg
tgtaacaaattggagataaatctggaagaattgaagcctgctaatgtgttgaatgaccga
gaccggattgcccgccttaaacctcagctgtcacagccaggaggatctaagcgagcagag
tcgactcctctctttcctgctctgcaaagttttccctctacaccatttatgccaaagaca
agctggtcgcaagctgtgccaacgggtgctgtcgttgatacaactggtgtaactgttcag
agtgcgtctgttggtgccacacctacacccccaacagttctgcctccacatccctccacc
acacccacacctatccaagctcaacagcaacctgcctcagagccacgttttatttattca
gatattaatgtaacgactctcaggggtctggatcctcacatatctgtctctgtacctcag
gtttgtggtattgcaaccaatgcacaggtaaaacagttagttcgccatgctgtagacttg
gccgtccaagaaattgttactgcagtaatggaacgtagtatcaagattgccatcactact
gcagagcacatcattaagaaggactttgcattagacccagatgaatctcgaatgcgtgct
gccacacatcatatggttcgaaaccttactgcagcaatggcaatgattacttgccgagat
tatctggccaccaatattaccaaaaacatcaagcagggaatgttgcaagcattttccagg
tccaaccaacaacagttacctcagcagatggaacaaatggagcagctggctgctgcactt
ggccaagagaatgttggcattgcctgtgcctttatccagaaaactgctgctgagaaagct
gttactgaaatggataaaagattgtctcaagaatatgaagctcggaaggtagctcgaacg
gaaggacgacgctattgtgatcctgtggtattaacataccaagcagaacgtatgcctgag
cttattcggttaaaagtgggtggagtcactccacctcaaatggctgtgtatgaagagttt
gctcggaacataccagggttcttgcctattactgaccaagatacaatgttcttagctaaa
cctgtgcctattacctctcaacagcagcagcagcagcagcaacaacagcagcagcagcag
caacagcagcagcagcagcaacagcagcagcagcagcaacaacagcagcagcagcagcag
caacaacaacaacagcaacagccatctcacacacaagcagcacctacacccccaacagtt
ctgcctccacatccctccaccacacccacacctatccaagctcaacagcaacctgcctca
gagccacgttttatttattcagatattaatgtaacgactctcaggggtctggatcctcac
atatctgtctctgtacctcaggtttgtggtattgcaaccaatgcacaggtaaaacagtta
gttcgccatgctgtagacttggccgtccaagaaattgttactgcagtaatggaacgtagt
atcaagattgccatcactactgcagagcacatcattaagaaggactttgcattagaccca
gatgaatctcgaatgcgtgctgccacacatcatatggttcgaaaccttactgcagcaatg
gcaatgattacttgccgagattatctggccaccaatattaccaaaaacatcaagcaggga
atgttgcaagcattttccaggtccaaccaacaacagttacctcagcagatggaacaaatg
gagcagctggctgctgcacttggccaagagaatgttggcattgcctgtgcctttatccag
aaaactgctgctgagaaagctgttactgaaatggataaaagattgtctcaagaatatgaa
gctcggaaggtagctcgaacggaaggacgacgctattgtgatcctgtggtattaacatac
caagcagaacgtatgcctgagcttattcggttaaaagtgggtggagtcactccacctcaa
atggctgtgtatgaagagtttgctcggaacataccagggttcttgcctattactgaccaa
gatacaatgttcttagctaaacctgtgcctattacctctcaacagcagcagcagcagcag
caacaacagcagcagcagcagcaacagcagcagcagcagcaacagcagcagcaagcagca
acaacagcagcagcagcagcagcaacaacaacaacagcaacagccatctcacacacaagc
agctttggtagtgaagaatcaacagctttcttggtgctaacagagagaatcagtgccgag
ttggagcacaccattcaagccttcacaacccttgcccccacatcgccacttataccaatg
cttcactctttacatgaaggacttctgcttacaagaaccaacagagatgtccatgctact
caaatgctacttagaaagtgtgtagaaaatctgatggaaggtgcacgggaattgcccaat
gaaccagaactgaatcaattagcgttgcgcttcagagactgccacctcattgttcttaaa
gccatggctgatcatcgttcctatggtgtaatgtggacatcaaagaatcttaccaaatgc
tgggcagaagccagagatgatatcaaatataatcttgatgttggagattggtttatccgc
tccaacttgtttaaccttcagcttctggatgaacacttggcacggactcttgatgaccct
cgcgtgcactcctatatcccttctctctttgtgatgcaactagtccaggtgtaccttata
gatgaccccagcaatagtgtgctaagagaaactgatttacagttaaccttagaggccttg
gtacgtatgtgtcattcccgacaagctcctgagggtcttgtatcactcattgaggcactg
cgcatgaagcatgacttgttaagtggtgagcgtttaactggaggaaacagccttagcgga
tctaccaatccattgtctgctgggcctagccttcactttcactctggtgttacacaggct
agagactttcaggatccacctgctctgcaagagaaaaccgaagtattattgcgagaatgg
atacagatgtatcactcgccaacggctggccaaggctcggcatctgctttccagcatttt
gtaaagcaaatgaatctacatggaattcttaaaacagatgatctcattaccagattcttt
cgcatctgcatcagcatgtgccgagatttgtgtgtgcgttccatcttagagcaaggccag
ggcccatcacctacttatgtacgcagcaaatgtttccagaatttggatgcatttgtacgg
ctcattgccttgttagttaaacactcaggagaggctaccaatcctactactaagataaat
ctccttaataaggtgttgggattagtgtgtggcataatgattcatgacattgagtctaat
ggcacagagtttcaacagctgccatatcatcgcatccttattatgctgttcttggaactc
aatgcacccgaagctatcttagaatcaatcaaccttccggtattgatggccttcacgcaa
acattacatctgttgcgacccagtaagtgtcctgggtttgcctatgcctggctggaaatt
gtgagccatcgggtgttcattgggcgtatgttggctattacaccacaacaaaaaggatgg
tccatgtactccatgttgttagctgatctctttaagtttttagcacccttcttaaggaat
gctgaactagcaaagccactaacaatgctttataagggtaccttacgtgtgctgttggtc
cttcttcatgacttcccagaattcttatgcgagtatcactatggattctgcgatgtcatc
cctccaaattgcattcagatgcgtaatcttattctgtcggctttccctagaaatatgcgc
cttccagatccttttacacctaatctcaaagttgatatgttgcctgaaattactgtatcg
cctaagattcacacaagtgttgccaacctcattcaacctccagaattcaagaaaaattta
gattcctatctaaaaaacagaacacctgtaacttttctctcagacatgagaacttactta
cagcaggtttccaatgaacctgggatgcattataacatgtctgtgatgaactccctggtg
ctatatgtaggcatgcaggccattgcacagattaatagcaagggtctcactccctccatg
tccacaattgctcattccgcccacatggacatattccagaatcttggtgttgatttggac
acagaaggccgatatctgtttttgaatgctattgccaaccagttgcggtacccaaatagc
cacactcattacttcagctgtactctactgcatctctttgccgaggctaatacagaagcc
attcaagaacaaattacccgtgtacttctggagcggcttattgttaatcgtcctcatcca
tgggggctactcataacattcatcgagctcatcaagaatccatcattcaaattttggagt
cacgagtttgtaaagtgtgctccagaaattgagaagttgtttgaatcggttgcgcgctcg
tgtatggtgcagaaggtatcaacctctcgggagggagaagcctga
DBGET
integrated database retrieval system
