KEGG   Procambarus clarkii (red swamp crayfish): 123770912
Entry
123770912         CDS       T07930                                 
Name
(RefSeq) roquin-1 isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
pcla  Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:pcla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pcla03000]
    123770912
   04121 Ubiquitin system [BR:pcla04121]
    123770912
Transcription factors [BR:pcla03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    123770912
Ubiquitin system [BR:pcla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    123770912
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-CCCH zf-RING_UBOX zf-RING_2 zf-CCCH_4 zf-C3HC4 zf-C3HC4_4 Prok-RING_4 zf-CCCH_UNK zf-C3HC4_2 zf_CCCH_4 Vesi_VP2 Cwp8_D2 zf-RING_10
Other DBs
NCBI-GeneID: 123770912
NCBI-ProteinID: XP_045619048
LinkDB
Position
14:42130379..42252253
AA seq 966 aa
MPIQAPQWTEFLSCPICCHEFDSGQRGPISLGCGHTVCRACLAKLQRNQCPYDQTVMRLE
LDQLPVNGALLSLVGAGSSAEEGDLPPPPPVPTSHTRNYFMAVKCIKDLALFLKPFSGSG
TNGSTSLLSRPMQRKLVTLINCQLVEDEGRARAVRAARSLGERTVTELILQHQNHQQLSA
NLWAAVRARGCQFLGPAMQEEVLKLVLLALEDGSALSRKVLVMFVVQRLEPHFPQASKTS
IGHVVQLLYRASCFKVSKREGDSSLMQLKEEFRTYEALRREHDAQIVQIATEAGLRIAPD
QWSSLLYGDTAHKSHMQSIIDKLQTPQSFGQSVQELVIALQRTGDPGQLSSLRPQLELLA
ALDPSPDAPPPGWKPCAAAMEAVRAVVTGLVHFIQHHGNRKMPDAHHPHNAKYKTSMCRD
LTQRGGCPRGNNCTFAHSEEELEKYRNRSRKHGKGIPQPPTTPAIKQQMHNHQSQQHPTQ
PQQQTQHPQGSVETVITTKNGEHPPVAVIQKTGTVEEIMQSGEVPTTPTPFDPHKFVHIP
AHTQSLPVLPAPTPAPAIIQPALAATSFHAAPMAEYTYSSFPCQPPVFAQAAPQQTIPSA
PTAVFPGQAAAIVPDIYGGNAPTMLLNTAPVYNVTGHASEFCIPIANTKPTNSGLHPLVS
CWPDTNCTTFCVNTTVTTTSLTTATNVASKSMEELKERKEAILNQLETIVGKEATHQVAT
QIANGEEPSKPQEFTSTYSIWTSGADFYIASKSIDKNYDPSTGYRTYTGRKDDSKGKDDF
IPFDPPLVSRFGPISRMSRTVIQPANPIQSSASNPTETTTTPTVRRPVPALSPMPQVLYP
GGYTVGVMTCIPTPLEHMNTLGHGIVDPLLTQLETSGLRTISADAAQQECLRQQFTAVRE
GIDAIVLDEKRMAEWQEVRLKEELSLVMNRIEVKRKEMEARNASRNCGKDFEDFEKNKKF
DFDDKE
NT seq 2901 nt   +upstreamnt  +downstreamnt
atgccgatccaggcccctcagtggaccgagttcctgtcatgtcccatttgctgccatgag
tttgacagtggtcagcgtgggccaatcagtttgggatgtggacacaccgtctgccgtgct
tgcttggccaagctgcagcgcaaccaatgcccttatgaccagactgtgatgaggctggag
ctggaccagcttcctgtaaatggtgcgttactgtcactggtgggggctgggtcgagtgcg
gaggagggggacctaccccctcctccaccagtgcctacatcacatacccgtaactacttc
atggccgtcaagtgtatcaaagatctagcactcttccttaaacccttctctggctctgga
acaaacggctctacgtcacttctgtcccgtcccatgcaacggaagctagtcactctcatc
aactgccagcttgtggaagatgaagggcgggccagagcagtccgtgctgcacgatctctg
ggtgaacgcactgtcaccgagctcatacttcaacaccaaaatcaccaacagctctcggct
aacctatgggcagcagtaagggctcgaggatgccagtttctgggaccagcaatgcaggag
gaagtgttaaagctggttcttctagctcttgaagatgggtcagctctgtcgcgcaaggtg
ctggtgatgtttgtggtgcagcgtctggagcctcacttcccgcaggcctccaagaccagt
attggacacgttgtgcagctactttaccgtgcttcttgcttcaaggtatccaaaagagaa
ggagactcatcactcatgcagttgaaggaagaatttagaacttatgaagccctaagacga
gagcatgatgcccagatagtccaaattgcaacggaagctggtctgagaattgcaccagat
cagtggtcatctctcctctacggtgacactgctcataaatcccacatgcagtctattata
gataagctccagacaccgcagtcgtttggccagtctgttcaagaattggtgatagcactc
caaagaacgggagaccccggccaattgtcatcgttaagaccgcagctagagctgctagca
gccttggacccctccccagatgctccccctcctggctggaagccttgtgcagcagcaatg
gaagctgttagagctgttgttactggattggtgcattttatacagcatcatgggaatcgc
aagatgccagatgcccatcacccacataatgcaaagtacaagaccagcatgtgtcgggat
ctgacccagagaggaggatgcccgcgtggaaataattgcacatttgctcattctgaagaa
gaacttgagaaatacaggaatagaagtcgaaaacatggcaaaggcattccacaaccacct
acaactccagctatcaaacaacaaatgcataaccatcaatctcagcagcatccaacacaa
ccccaacaacagacgcagcatccgcaaggaagtgtagaaactgtaataactacaaaaaat
ggagagcatccacctgttgcagtcattcagaagactggtacagttgaagagattatgcag
agtggggaggtgcccacaactcccactccatttgacccacacaagtttgtgcatattcca
gctcatactcaatcattgccagttttacctgccccaacgcctgccccggcaattattcaa
ccagccttagctgcaacctcttttcatgcagcaccaatggccgagtatacttacagttcc
ttcccgtgtcagcctcctgtgtttgctcaggcagcaccgcagcagacgataccttccgca
ccaacggctgtttttccaggtcaggctgcagcaatagttccagatatatatggtggaaat
gctcccacaatgcttctgaatacagccccagtttacaatgtgactggccatgctagtgag
ttttgtatccctattgctaatacaaaaccgaccaactctggacttcacccattagtctcg
tgttggccagatactaactgtaccacattctgtgttaacaccactgtcacaactacttcc
ttaacaacagcaacaaatgttgcgtctaaatcaatggaagaattgaaagaaagaaaagag
gccattttaaatcaactggagacaattgtcggcaaagaggcaacacatcaagttgcaacc
caaattgcaaatggtgaagaaccaagcaaaccacaagaattcacatcaacgtatagtatt
tggacatctggtgctgacttttatattgcttcaaaatcaatagataaaaattatgatccg
agcacaggttatcgtacgtacacgggccgaaaagacgactcgaaaggaaaggatgatttt
atcccttttgaccccccattagtaagtcgttttgggccgatctctagaatgtcacgaacg
gtgatccagcctgccaatccaatccagtcatcagcaagtaaccctacagaaactacaacc
actcctactgttagacgaccagtacctgcactctcacccatgcctcaggttctgtaccca
ggaggctatacggtgggggtaatgacgtgcattcccacgcccctggaacacatgaacaca
ctgggccatggtattgtcgacccacttctcactcagctggaaacttcgggtctcaggaca
atatctgcagatgctgcccagcaagaatgcctgaggcagcagtttactgcagtgcgggaa
ggaattgatgccatcgttttagatgagaagaggatggctgagtggcaagaagttcggcta
aaagaggagttaagcctcgtcatgaaccggatcgaagtcaaacgaaaagaaatggaagca
agaaatgcttctaggaattgtggaaaagattttgaagattttgagaagaacaagaagttt
gactttgatgataaagagtga

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