Procambarus clarkii (red swamp crayfish): 123772169
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Entry
123772169 CDS
T07930
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123772169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123772169
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123772169
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
123772169
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123772169
NCBI-ProteinID:
XP_045621160
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All DBs
Position
69:25090465..25102204
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AA seq
290 aa
AA seq
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MVDVNLSDAEKRYIVDGVKLGTRVDGRNHLDYRQLEIETSLVSTANGSARIRLDRTDVLI
TIKMEMEPPQLDQPRNGQLHFFVNCSANAAPEFEGRGGEDLATSLSSMLERVYSSPHTLD
TSKLCVVPGKHVKVLYVDIEVLECGGNLFDAVSLGVKAALWATKMPRIYITGEDGGELEF
SMSDNPHDVDRLDVSNAPILITHLRITENLTVVDPTPEEECCGPVQIVVGVTPKGLITAT
QQFGSGTFTPQTLSASIKSARDLGVKIHQQLMQKLQQEETIVDRAIKGFL
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgtaaatcttagcgatgcagagaaaagatatattgtggatggagtaaagtta
ggtactagagtggatggtcgaaaccaccttgattatcgacagcttgaaatagaaactagt
ctagtttctacagctaatggttcagctcgaattaggcttgaccgtacagatgttttaatt
acaatcaaaatggaaatggaaccaccacagctagaccagcccagaaatggacaactccat
ttttttgtaaactgttctgctaatgcagctccagagtttgaaggcagaggtggtgaggat
ttggctacaagtttgagttccatgttggaacgagtatattcttccccacacactttagac
acttcgaagctttgtgttgtcccaggcaagcatgtgaaagtgctgtatgttgatattgag
gtcttagaatgtggtggaaatttgtttgatgctgttagtttgggagtgaaggcagcgctc
tgggccaccaagatgccaagaatttacattacaggagaagatggtggagagttggagttc
tcaatgtcggataacccacatgatgtagacagactggatgtctccaatgccccaattctt
attactcatctgcggataacagagaatctgacagttgttgatccaactcctgaagaagaa
tgctgtggtcctgtgcagatagtggttggtgttaccccaaaaggcttaattactgcaact
caacagtttggttcaggaacatttacacctcagacactaagtgcttctatcaagagtgca
agagacctcggagtaaagattcaccagcaacttatgcaaaagttacagcaagaagaaacc
attgtggatagggcaataaaagggtttctttag
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