Procambarus clarkii (red swamp crayfish): 123772701
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Entry
123772701 CDS
T07930
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04382
Cornified envelope formation
pcla04512
ECM-receptor interaction
pcla04518
Integrin signaling
pcla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123772701
04518 Integrin signaling
123772701
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123772701
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
123772701
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcla04147
]
123772701
00536 Glycosaminoglycan binding proteins [BR:
pcla00536
]
123772701
Exosome [BR:
pcla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123772701
Glycosaminoglycan binding proteins [BR:
pcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123772701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123772701
NCBI-ProteinID:
XP_045621991
LinkDB
All DBs
Position
50:9269223..9315536
Genome browser
AA seq
1739 aa
AA seq
DB search
MHGPGPSSRNVFPALFLVLFFTDTSLAKVCLNCFTCLCEGQKGFFGAPGIPGLQGSTGFP
GHQGEEGPPGPGGPIGDYGENGAIGEKGIRGDMGMPGFQGTAGIPGLPGLEGPAGIDGPP
GCNGTDGAPGRSGFPGPPGVRGPPGPEGSLGPVGEPGEGGTNSRGIKGDQGEPGQLGSRG
YRGLPGTRGARGDYGLPGLMGIRGVVGDKGPVGEEGDLPPPLPPNVGPPGEKGDPAMPGP
YYEGPVTGIQWKGMIGDKGFPGQPGPYGSPGVVGFNGPPGEKGLKGERGREGQKGKDGRT
GQRGVPGSKGFKGAPGLAGYSGSKGFKGDKGEPGFDGRPGPVGDAGVPGIYDPADTIVYR
GPPGPQGPPGLVGPPGVDGFDGRVGGVGQRGPPGFPGPVGVDGDPGVDGRSEKGEPGDDG
YPGLIGRPGLRGPDGPPGIPGLKGLPGDPAFGNKGLDGRPGRPGVNGLPGPPGIPGPRGP
KGFPGQGRAIIGPKGPKGLMGPSGEPGLMGANGRNGFSGRKGVKGDDCFTPRTTCVKGDD
GNPGPSGITGRVGLPGLPGPRGPKGGAGKIGLPGLRGLEGVPGAAGYSGRAGKKGEQGDL
YPGPLIKGRQGNDGYPGANGLKGARGDLGLDGIRGLQGRKGDRGEDGPSGRPGVFGLPGL
IGDSGIGQKGEPGQSGFKGAVGEIGFPGRPGQVLGADGANYTMLFIGEKGPIGIIGPKGR
QKGEKGEQGPTGPVGARGPVGLTIPGESGLKGYPGQTGDPGRVGFKGAPGRDGIPGINGV
KGPKGEDGEDGISGIAGPPGTPGWLGQKGEPGLDGIPGSKGYFGLPGPPGRLGSKGAPGN
LGISGRKGIKGDVGDSIAGPPGVAGRQGPPGFPGIPGDAGISGRPGLPGATGYEGSKGER
GLDGLVGLPGDNGRNGVPGGPGQPGRNGRNGLKGERGLMGIPGFPGDAGLPGPDGRVGQP
GPIGDVGVPGNSGFEGNPGPKGQRGFLGEIGFRGPPGLNGTFSGHGDFGEKGEPGDFGQP
GFPGIIGVIGLPGLPGISYTGAKGQIGPIGLPGTSGLYGRNGRKGAMGMMGLPGPSGERG
DQGVPGAPGPHGGRLVGPPGLQGLPGDKGQSGEPGRFGNRGLPGDDGFRGLPGRVGLKGY
RGLPGDRGNPGIIIGGMPAETGEPGRPGRQGNPGRDGLPGLPGIKGLYGDAGQPGFRGQP
GLNGYRGDDGVRGPRGPEGLPGRKGEPGLKGMEGRPGQSGRSGIHGQKGQPGDFGLDGPD
GLKGLPGISRDGFKGERGDSGFPGAPGRIALPGLPGLDGQVGDRGYERGPVGDPGLPGLI
GAKGLPGDPGPRGFTQPPGLPGAVGDPGFDGFPGLPGIIGDHGETGSPGLAGAFGISGLK
GGQGDPGAEGLSGIPGQPGSRGDIGNTGGLGAPGFMGKPGRDGQKGHKGMVGDGGLPGRP
GQPGARGLRGIQGFDGPPGLIGQPGLPGLTGDPAPPGLPPKSRGYLITRHSQEPIAPVCP
SGTSVMWQGYSLLHVMGNHRAHGQDLGAPGSCLKKFSTMPYLFCNLNNVCDYSQRNDYSY
WLSTTEPMPMMMTPIEGPQIEKYISKCVVCEAPSMVMAIHSQTLEVPDCPGQWESLWIGY
SFIMHTDSGAEGSGQSLISPGSCLEDFRSSPFIECTGQGRCNLFPSAFSYWLATIEVEQQ
FRKPQQQTLKAGDLKSRVSRCNVCVRKRSNIPVIPTPPPEFRRQPYDTTAFDDRYYYGG
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggccagggccctcctcacgcaacgtcttccctgctctctttttagtattattc
tttactgacacttctttagcgaaggtatgcctaaactgcttcacctgtctgtgtgagggc
cagaagggattttttggagccccaggcatccctggacttcagggctcaactggtttccca
ggacaccaaggagaagagggcccaccaggccctggaggacctattggggattatggagaa
aatggtgccattggggagaaaggcataagaggagacatgggtatgccaggctttcaaggg
actgctggtattcctggtcttcctggactagagggcccagcaggtattgatggtccacct
ggctgcaatggcacggacggtgccccaggccgaagtggtttcccaggaccaccaggtgtg
agagggcccccaggtcctgagggtagtcttgggcctgttggcgagccaggtgaaggtggc
accaattcaagaggcatcaaaggagatcaaggagagccaggccagcttggatccagagga
tacagaggtttaccgggaacgcgaggagcgaggggggactatggactacctggtttaatg
ggcatacgtggtgttgtgggagacaaaggtcctgttggtgaggaaggagacctaccacca
cccctccctcctaatgtgggaccaccaggagagaagggtgatcctgcaatgccgggtcca
tattatgagggtcctgtaactggcatccaatggaaaggaatgattggtgacaagggattt
ccgggacaacctggaccatacggcagtccaggtgtcgttggttttaatggacctcctgga
gagaaaggtttgaagggagaacgtggcagagagggccagaaaggcaaggacggccgtaca
ggtcaaaggggtgtgccgggctcgaaggggttcaagggggcgcctggactggctggatat
tctggctcgaaaggttttaagggtgacaaaggagagcccggctttgatggtcgtccaggc
cctgtgggtgatgcaggagtgcctgggatatatgacccagcagatactatagtctacaga
ggtcctcctggtccccaaggtcctccaggacttgtggggcctcctggtgtggatggattt
gatggtcgagttggaggtgtggggcagcggggtcccccaggttttcctggtcctgtcgga
gtggatggagacccaggagtcgatggccgctctgagaagggtgaacctggagatgatggt
tatcctggtctcattggtaggcctggacttcgtggcccagatggtccgccgggtattcct
ggtttgaagggcctgcccggtgatcctgcgtttgggaacaagggcttagacggacgtcct
ggccggcctggtgtgaatggcctgccaggccctcctggaattcctggacctagaggtcca
aaaggtttccctggccaaggtagagccattattggtcctaaagggcccaaaggcctcatg
ggaccctcaggtgaaccagggctgatgggtgctaatgggcgaaatggcttctcgggccgc
aaaggagtgaagggagatgattgcttcacgccaagaacaacgtgtgtaaagggtgatgac
ggcaacccgggtcccagtggaataacagggcgggtaggtttaccaggtcttcctggtcca
cgaggacccaaaggtggcgcaggaaagataggccttccaggattaaggggactggagggt
gtgccaggagctgcagggtactcgggcagagctggcaagaaaggtgagcagggagacctg
tatcctggaccattaataaaaggcagacagggaaatgacggttacccaggagccaatggc
ctcaaaggtgcacgcggtgaccttggccttgatggaataagaggattacaaggaagaaag
ggtgacagaggtgaagatggaccttctgggcgtcctggtgtatttggtcttcctggtcta
ataggtgatagcggaattggacaaaagggagaaccaggtcaaagtggatttaaaggtgct
gtaggagaaataggtttcccaggtcgacctggacaagtgcttggggccgacggagcaaac
tatactatgctcttcattggtgaaaagggtccaataggtataataggaccaaaaggcaga
cagaaaggtgagaaaggtgaacagggacccacaggaccagttggtgcgaggggtcctgta
ggcctcaccattcccggagaatcaggacttaaaggatatcctggacaaactggagaccca
ggtcgtgttggatttaaaggtgccccagggcgtgacggcattcctggaataaatggagta
aagggacctaaaggagaagatggagaagatggcatcagtggaattgctggcccaccaggt
acaccaggctggcttggacagaaaggagagccagggcttgatggcataccaggctcgaaa
ggctattttggtttgccaggacctcctggccgactagggagtaaaggtgccccgggaaac
cttggtatttcaggtcgaaagggcattaagggtgacgttggtgacagtatagctggtcct
cctggtgttgctggtcgacagggtcctccaggcttccctggtatccctggtgatgcaggc
atttcaggcagacctggtctaccaggagctactggatatgagggttcaaagggtgagcgt
ggacttgatggcttggtcggccttccaggtgataatgggcgtaatggtgtacctggaggt
cccggtcagcctggaagaaatggtcgaaatggtctgaagggagagcgaggcttaatgggc
attccaggttttccaggtgatgctgggcttccaggacctgatggacgtgtaggacaaccg
ggaccaattggtgatgttggggttccaggaaattcaggttttgaaggaaaccctggacca
aagggccagagaggcttcctgggagaaataggtttccgtgggccacctggtttaaatgga
accttttctgggcacggtgatttcggtgaaaaaggtgagccgggtgattttggacaaccc
ggttttcctggaattattggagttataggacttcctggattgccgggtatcagctacaca
ggggccaaaggtcaaattggccccattggtctaccaggcacatcaggcctatatggcaga
aatggaaggaagggtgcgatgggaatgatgggattgcctgggcccagtggagaacgtggt
gatcaaggagtgcctggagccccaggaccacacggagggagactagtgggtccacctggc
cttcagggactacccggagataaggggcagagtggtgaaccaggcagatttggaaacagg
ggtctaccaggtgatgacggttttcggggtcttcctggacgtgtcgggttgaagggctac
aggggcttgccaggtgaccggggcaatccaggcataattattggtggaatgccagctgag
accggagagcctggtcgaccaggacgtcaagggaaccctggcagagatgggttgccaggc
cttccagggattaagggtttatatggtgatgctgggcagccaggttttcgtggccaacct
ggactcaatggctaccgtggtgacgatggtgtaagaggacctagaggcccagaaggattg
ccagggagaaaaggtgaaccgggactaaaaggcatggaaggtcgtccaggtcaatcaggc
cgatctggaattcatggacagaaaggtcaaccaggagactttggtttagatggtcctgat
ggtctgaaaggtcttccaggcatcagccgtgacgggttcaaaggagagcgtggagattca
ggttttcctggtgctcccggaagaattgcattaccaggactgccaggtcttgatggccaa
gtaggtgacagaggctacgagagaggaccagtaggagacccgggactacctggcttgatt
ggtgcgaagggtctgcctggtgaccctggccctcgaggctttacccagcccccaggtcta
ccaggtgctgttggagaccctggctttgatggcttcccgggattgcctggcattattgga
gaccatggagaaactggaagtccaggtttagcaggggcgtttggaattagtggattgaag
ggaggccaaggtgacccaggcgctgaagggttgtcgggtataccaggccagccaggaagt
aggggtgatattggtaatacaggtggtcttggtgcacctgggttcatgggtaagcctggt
cgagatgggcaaaagggacacaagggaatggtcggtgatggaggactgccagggcgccca
ggccagccaggtgcccgaggactgaggggtatccaaggctttgatggtccaccaggttta
ataggacagccaggcctccctggtttaactggagacccagcccctccaggcctgcctccc
aaatcaagaggctatctcatcaccagacactcacaggaacctatcgctccggtgtgtccc
agtgggactagtgtcatgtggcaaggctattccttgttgcatgtgatgggtaaccacagg
gctcatggacaggatcttggtgctcctggaagctgtctgaagaaattcagcacgatgccg
tacctcttctgtaaccttaacaatgtgtgcgactactctcaaaggaatgattactcgtac
tggctatccaccaccgagcccatgccaatgatgatgacacccattgaaggaccacagata
gaaaaatacatttcaaaatgtgtcgtgtgtgaagctccatcaatggtaatggcaatccat
agtcagacactggaggttcctgactgccctggacagtgggagtcactgtggattggctat
tcatttattatgcatactgactctggagcggagggctctggccagtcccttatctcacct
gggtcgtgtctcgaggatttccgttccagtccatttatcgagtgtacggggcaaggtcgc
tgtaatttattcccctctgcattttcctactggttagcaacaattgaggttgagcaacaa
ttccgaaagcctcaacagcaaacactgaaggctggggacctcaagtcccgtgtcagtcgc
tgcaatgtttgtgttaggaaaaggagtaatattcctgtaattccaactcctccaccagag
ttcagaagacaaccttatgatactaccgcatttgatgataggtactattacggtggctaa
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integrated database retrieval system
