Procambarus clarkii (red swamp crayfish): 123772781
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Entry
123772781 CDS
T07930
Symbol
Col4a1
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04382
Cornified envelope formation
pcla04512
ECM-receptor interaction
pcla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123772781 (Col4a1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123772781 (Col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
123772781 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcla04147
]
123772781 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
pcla00536
]
123772781 (Col4a1)
Exosome [BR:
pcla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123772781 (Col4a1)
Glycosaminoglycan binding proteins [BR:
pcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123772781 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123772781
NCBI-ProteinID:
XP_069159582
LinkDB
All DBs
Position
50:complement(9105456..9268977)
Genome browser
AA seq
2278 aa
AA seq
DB search
MGGYTRGMGRIPAPPLSLRGYWLCATVLLYTFHTAESENWLWGEESTSEGSPTAHLSSEP
SSETFVYNSQDKSQQLDNDTEDNYDYEGVEQSDSEIESELSTGSPSSDDSLDSQPYDKVG
NASHSGKKYSFNYTFTYGNEGNDSGLSSDSESSDVSKRFSDRDRADGRITYTYNRRYNAE
DLDNSDRPGTYNGTTYTFRNRYGSDGGQGDIQDGYYGEGSGGGHISSSGGSFEQNGQFGD
HTYGSGYGDSSGGGSSDVRYRVNSGRRQFGVGGRVRYGEGGAGQYGGGGARQYGGGGAGQ
YGGGGAGQYGGDGREEYGGGEYGNEEDSRGGGGYGTHSAGSGYGASYGSAGGRLGSDSER
EGRVDVDDRYGTRPGEEHDRSGTGEEYGGGAGDREGYGGGIAGRREYVVGGTREGYTGGE
ETRESGIEGEYSGGTAGRGYVSGTSGGGYVSGTSSGGYVSGTSGGGYVSGTSGGGYVSGT
TGGGYGSRTTGGGYVSGTTGSGYDSGATGGGYGSRTTGGGYVSGTTGGGYVSGTTGGGYG
SGTADGRYGSGSAGGGYGRGSGSDEGGAYGAAGADRSSQPQVQPRPFPRRPEQVPELECG
GGDCNNNGCKCIGEKGSRGSPGLPGPTGEKGQQGFPGMEGLMGPKGSKGEHGPQGPTGPK
GDRGKMGLNGFPGINGIPGIPGPPGPTGRPGLDGCNGTDGSPGLPGIPGPPGPRGFRGPE
GQKGLKGEPAIGPCTTDKGEKGEPGRDGRQGPQGPAGVPGPKGETGYPGASGLKGEKGYP
GSKGDKGPMGLTVLGVPGEKGEKGAKGDANNCTIQDVLQPNCTSFTIVEMGEKGNQGLPG
SEGQKGSKGDRGAQGYPGPRGPSGEKGLPGYPGPPGREGVAGPPGPNGYKGDRGPDGLDG
LPGLKGDKGDSGYGGRDGAKGDRGPPGPSVGGEPGPQGPPGLRGLPGPKGRDGIDGIPGP
RGPQGAPGGPGQPGNTGREGLPGKKGDKGDAGLPGQEGPQGPPGLPGERGLSGLPGPKGN
KCFSIPGENGRDGTPGRDGIPGSRGPVGPEGPRGIPGDSINGIPGTPGEPGLVGPPGIPG
NPGLDGISGRDGAKGDRGLDCECGQCEKGEKGHPGPEGLPGIQGPRGPPGPIGYPGERGQ
DGQSGVPGLPGKEGLPGTPGLPGGKGDKGEAAYALPGPPGTKGEPGRLGLPGIPGLKGEP
GFPGRPGLQGLPGFKGEPGLRGLDGIDGTPGPKGETGVCIKGEVGEPGRNGTKGERGKPG
TDGESATADQLCKDGKGPQGYKGEVGPEGPPGDKGDEGLLGLTGPPGPQGYPGQPGPRGL
PGPRGEKGDRGPQGLTGDNGQPGQPGIPGYAGPKGDKGADGRPGVGRPGQPGIPGAKGES
GLHGLPGKTGLPGAQGPPGVPGIKGEQGLPGQHGLDGLKGDKGDLGLPGRIGLPGIRGLP
GLDGQKGVPGLPGPQGPAGVVGFPGPKGERGTPGLNGIKGVPGNPGQPGLFGRPGADGTP
GAPGPKGDMGIAGFPGSPGIIGRPGQTGSPGLKGNIGFPGSPGLPGIPGREGLRGDKGER
GPMGPEGVPGTSAAKGDKGSQGLKGDAGVPGPPGPRGLQGIAGPKGRDAYGLPGPAGDRG
PPGPPGLDGLDGQPGPPGTSGVPGFPGAKGDRGFPGLTGPVGEGCVPIPGPQGLKGVLGL
KGEPGLDGRDGEKGLMGRTGSPGPDGLTGPSGDKGTPGPPGLPGAAGQKGSKGEPGLPGV
QGIEGRPGLDGRTGPKGDKGNAGLPGANGLPGIEGLKGEKGNPGPQGPRGEIGMTMKGEK
GLPGLPGKPGRNGINGEKGEKGEIGFAGLPGQRGPAGDPGLPGLNGAKGDRGSPGPAGVP
GLDGRTGVPGQKGLPGPPGEKGYPGRVGPIGPPGPKGDNGFQGPPGLPCPPGPKGERGIN
GLTGPPGEKGIRGPKGFDGLPGVSGRPGPQGPKGDPGFPGINGRPGLNGLKGQRGLPGPQ
GLRGPEGPEGSPGMPGMPGVKGDRGFDGLPGNVGPPGMKGDRGFEGAPGLSGPPGFPGSK
GEAGSSCQAQQQYYSGTLVVRHSQTTIAPRCEFGHSVLWEGYSLLYVEGNEKAHHQDLGL
AGSCVRRFSTMPFMFCDFNNVCNYASRNDKSYWLSTNDPIPMMPVADTAIRPYISRCVVC
EAPANVIAVHSQSLSIPECPNGWSGMWIGYSFVMHTAAGAEGGGQSLSSPGSCLEDFRAT
PFIECNGARGTCHYFANKFSFWLATIEEREQFSRPVSETLKAGSLLTRVSRCQVCIKN
NT seq
6837 nt
NT seq
+upstream
nt +downstream
nt
atgggtggttataccagagggatgggcaggatacccgccccacctctctctctgaggggc
tattggctatgcgctactgtgctcttatataccttccacacagcagagtcggagaattgg
ttatggggagaggaatcgacgtcggaaggcagtcctacagctcatctctcttcagaaccc
tcaagtgaaacgtttgtttataactctcaggataagtctcaacagcttgataatgataca
gaagataattacgactatgaaggtgttgagcaaagtgatagtgaaatagaaagtgagctt
tccacaggaagcccatcaagtgatgatagcctagacagtcagccctatgacaaagttggc
aatgccagccatagtggcaaaaaatatagctttaactacacctttacctacgggaatgaa
ggcaatgacagcgggctcagctctgacagtgaaagcagtgacgtcagcaaaagatttagt
gatagagacagggcagatggccgtatcacttacacttataacaggagatataatgcagaa
gatctcgataacagtgacagacccggcacctataatggcactacttataccttcagaaat
cgctatggcagtgatggtggccaaggggatatacaggacgggtattatggtgagggaagc
ggaggaggccatattagcagtagcggggggagttttgaacagaatggccagtttggggac
cacacttatgggagtggatatggagacagttctggaggtggcagttctgacgtaagatac
agagttaatagtggaagaagacagttcggggttggtggaagagtgaggtatggagaaggt
ggagcaggacaatatggaggaggtggagcaagacaatatggaggaggtggtgcagggcag
tatggaggaggtggagcagggcagtatggaggagatggaagagaggagtatggaggaggt
gaatatggtaatgaagaggacagtcgtggtggaggaggatatggaacacatagtgctggg
agtggttatggagccagctatggaagtgctggtgggagacttggaagtgacagtgaaaga
gaggggcgtgtagatgttgatgaccgatacggaacccgtcctggagaagagcatgataga
agtggtactggtgaagagtatggaggtggggctggtgacagagaaggttatggaggaggt
atagctggcagaagagaatatgtagttggtggtaccagagaaggatacacaggaggtgaa
gaaactcgtgaaagtggcattgaaggtgaatatagcggtggaactgctggtagaggatat
gtcagtggaacctctggtggagggtatgtcagcggaacctctagtggagggtatgtcagc
ggaacctctggtggagggtatgtcagcggaacctctggtggagggtatgtcagcggaacc
actggtggaggatatggcagcagaaccactggtggagggtatgtcagtggaacaactggt
agtggatatgacagtggagctactggtggaggatatggcagcagaactactggtggaggg
tatgtcagcggaaccactggtggggggtatgtcagcggaaccactggtggaggatatggc
agtggaactgctgatggaagatatggcagtggatctgctggtggaggatatggcagaggc
agtggaagtgatgaaggaggtgcctatggtgctgcaggtgctgataggtcctcgcagcca
caagtgcagccccggccttttccaaggcgcccggaacaagtccccgagttagaatgtggt
ggaggagactgcaataacaatggttgcaaatgcataggagagaaaggctctagaggatct
ccggggcttcctggaccaacaggagagaagggccagcagggttttcccggcatggagggg
ctgatgggaccgaagggcagcaaaggagaacacggtcctcaggggccaacagggcctaag
ggtgaccgaggtaaaatgggtcttaatggcttccccggtatcaacggaattccaggtatc
ccaggccctccagggcccacaggcagaccagggctggacggctgcaatggtacagatggc
tcaccaggcctgccaggcatacccgggccacccggccctcgaggattccgtggtcctgaa
ggccagaaaggattaaagggagaaccagccattggaccgtgtaccacagacaaaggagag
aaaggagagccggggcgtgatggcagacaggggccccagggacctgcgggtgtgcctggc
cccaaaggcgagacgggatacccaggagcaagtggattgaagggagaaaaggggtatcct
ggaagcaaaggagacaaaggtcctatgggtttgactgtgttaggtgtgccaggagaaaag
ggtgaaaagggagctaagggtgatgccaataattgtacaatacaggatgtcttacaacca
aattgtacctccttcactatagtggaaatgggtgagaaaggtaaccaaggactaccagga
tctgaggggcagaagggcagcaagggtgaccgaggtgcccagggttacccaggtcctcga
gggccatcaggagagaaaggtcttccaggttacccaggaccaccgggacgagagggtgtt
gctggtcctccaggaccgaatggatataagggtgaccgaggtcctgatggattggacggc
ttgcctggtttgaaaggagataaaggtgacagtggttacggtggccgggatggtgcgaag
ggtgaccgtggacctccaggaccctctgtgggcggggagccgggacctcaagggccacca
ggtctacgaggcttgccaggacccaagggaagggatggcattgatggaattccaggacca
cggggtcctcaaggtgcacctgggggtccaggacagcctggtaacaccggaagagaagga
cttccaggaaagaaaggagataagggagatgcggggcttccaggccaagaaggaccccaa
ggaccaccgggtctgcctggtgagcgtggtttatcaggacttccgggcccaaagggaaac
aaatgtttctccattcctggagaaaacggacgtgatggaacacctggacgagatgggatt
ccaggttcccgtggcccagtgggtcccgaaggtcctcggggtattcctggtgacagtata
aatggtatccctggaactcccggagagccaggacttgttggcccacctggtataccgggt
aatcctggcctagatggtatttctggccgtgacggggcaaagggcgacagagggctggac
tgtgaatgtggtcagtgtgagaaaggcgagaaaggccatcctgggcctgaaggattacct
gggattcaagggcctcgaggaccgccagggccaattgggtacccaggagagaggggccag
gatggacagtcaggagttccaggtctgcctggcaaggagggccttccaggcacaccaggg
ttaccaggaggaaaaggtgataagggtgaagcagcatacgccctgccaggccctccaggt
acaaagggtgaaccaggccgactaggtcttccaggtattcctggattgaaaggagagcct
ggtttcccagggagacctggcttacagggtctaccaggtttcaagggagaaccaggacta
agaggcctggatggaatagacggcacaccgggtccgaaaggagagacaggagtttgtata
aagggtgaagttggcgagcctggacgaaatggtacaaaaggtgaacgtggaaaacctggt
acagatggtgaatccgccacggcagatcagctttgcaaagacggaaaaggtcctcaaggt
tataagggtgaagtgggacctgaagggccacctggcgataaaggagatgagggtcttctg
ggcttaacaggaccacctggaccacagggctacccaggacaacctgggccacgtggtttg
ccaggcccaaggggtgaaaaaggagacagaggtccacagggtctaactggtgataacggt
caaccaggacagcctggtatcccaggttatgcaggacctaaaggtgacaagggtgcagat
ggtcgaccaggtgttggaaggcctgggcaaccaggcattcccggagcaaagggtgaatct
ggtttacatggattgccggggaaaacaggcttaccgggtgctcaaggtcctcccggagtg
cctggcattaaaggcgaacaaggtctacctgggcaacacggactagatggtttaaagggt
gacaagggagaccttggccttcctggacgcattggacttcctggaatccgagggttacca
gggcttgatggacaaaagggtgttcctggcttaccaggtccacaaggcccagccggtgtt
gttggtttcccagggcccaaaggagagaggggtactcctggcttaaatggaatcaaaggg
gtacctggtaatccaggacaaccaggtttgtttggacgacctggagccgatggcactcct
ggtgcacctggaccaaagggggatatgggcattgcaggttttccaggaagccctggcatc
attgggagaccaggacaaactggatcacctgggttgaagggtaacataggttttccaggt
tcacctgggctaccaggcatcccaggacgagaaggtctgagaggtgataaaggcgaacgg
ggacctatgggcccggaaggtgtgccaggaacttctgctgctaaaggagacaagggtagt
caaggcctgaagggtgatgcaggtgtgccaggacctcctggaccccgtggattacagggt
atagcaggtccaaagggacgtgatgcgtatggtctcccgggtcccgcaggtgaccgagga
cctcctggacctcctggtctggatggcttggatggacagcctggtccaccaggaactagc
ggtgttcctggtttccctggagctaagggagacagaggatttcctggactgactggacca
gttggagagggatgtgttcctatcccaggtcctcaagggttaaaaggcgttctaggcctg
aagggtgaaccgggactcgatggtcgtgatggtgaaaagggactgatgggccgtacaggt
tcacccggtccggatggattaacaggaccttcgggtgacaagggcactccaggacctcca
ggcttaccaggtgctgctggccagaaaggcagcaagggagaacctgggctacctggtgtt
caaggaattgaaggtagaccaggtttggatggtcgcactggacctaaaggtgacaaagga
aatgctggattaccaggtgcaaatggattgccaggcatagaaggacttaaaggagaaaag
ggtaaccctggtcctcagggtcctcgtggtgaaataggcatgactatgaagggtgaaaag
ggcttgcctggtttaccaggtaagcctggccgtaatggtataaatggagaaaagggtgaa
aagggcgaaattggatttgctggattacctggccagcgtgggccagctggtgacccaggt
ctccctggtcttaatggtgctaagggtgatcgaggatcaccaggtcctgctggagtgcct
ggtctagatggcagaactggagttcctggtcagaaaggcttaccaggacctccaggagag
aaaggttacccaggcagggtaggacccataggaccacctggtccaaaaggagacaatggt
ttccaaggtcctccaggattaccatgccccccaggacccaaaggtgagagaggcataaat
ggtttgactggtcctcctggagaaaagggtatccgtggtccaaagggctttgatggcctg
ccaggtgtatctggtaggccaggaccccaaggccctaaaggcgacccaggattccctgga
ataaatggtcgtcctggcctcaatggtcttaagggtcaacgtggtttgcctggaccacag
ggcctaagaggaccagaaggacctgaaggtagtccaggtatgcctggtatgcctggagtc
aagggtgaccgtggctttgatggattaccaggaaatgttggacctccaggaatgaaggga
gaccgtggtttcgaaggagcaccaggactttctgggccaccaggattccctggaagcaaa
ggagaggcaggaagcagctgtcaagctcaacaacagtattattccggtacattggttgtg
cgacattcccagaccaccattgccccacgctgtgaatttggtcatagcgttctttgggaa
ggctattctctattgtatgttgaaggcaatgaaaaggcccatcatcaagatttaggtttg
gctggttcctgtgtaagaagattcagcacaatgccattcatgttctgtgacttcaacaat
gtatgcaactatgcatctagaaatgacaagtcatattggctttcaacaaatgatcctatt
cctatgatgcctgttgccgacactgccattcgaccatacatatcaagatgtgtggtatgc
gaggctccagcaaatgtgattgctgtccacagccagtcattgagtatcccggagtgtccc
aatggatggtccggcatgtggattggctactcctttgttatgcacacagctgccggtgca
gaaggcggcggccagtccctcagcagtccaggttcgtgtctcgaggacttcagagctacg
ccattcatagagtgcaatggagcaagaggaacttgccactactttgccaacaaatttagt
ttctggcttgccacaattgaggaaagagaacaattttcacggcctgtctcagagactctc
aaagctggcagtttactcactcgggtctcaagatgccaagtttgtattaagaactaa
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integrated database retrieval system
