Procambarus clarkii (red swamp crayfish): 123773739
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Entry
123773739 CDS
T07930
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
123773739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcla03000
]
123773739
Transcription factors [BR:
pcla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
123773739
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
RHD_dimer
RHD_DNA_bind
Ank
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
123773739
NCBI-ProteinID:
XP_045623585
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All DBs
Position
72:complement(5391895..5448259)
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AA seq
1269 aa
AA seq
DB search
MPCKRCQGRNLEHGTVEYCVARCGPSQVGSSAPAPRGSPSVNIIGTGDFPSCGKQCASAC
LHHLTAFGSVTGGKRQCCGGMNSPYSGESASPYSDQSVGVPSPPTVVAAFNRPYDAVHHD
GPYIHILEQPQSKFRFRYKSEMVGTHGQLKADRAVKNRAIFPTVKLAKWNHGPAVMRLTL
FTAEDNVNQRKRHVHELSGKNCDKETGICEVVVDDKCNYTAVFQNLGIIHIAKRDTREII
MQRKRDELMVHARLRKPHCAYEEIKRSITPTDLKRMDDEAEEEAKSMDLNKVVLRFQAFQ
YDKSIESYRPITLPVDSEVVFNLKNATTGELRIVRMSACSAPCTGGTEIWLLVEKVRRNN
VQIKFFELDQNDREVWTAYGEFTDADVHHQYAIVFKTPRYRNTNLNTSVRVKVQLERPTD
RDTSEPLDFTYLPDSLKRSRVNLENTLEEGKRHYNDPPAKRLNYNPYTSEAIDLSNNTRG
CRGQEDSVQAPDFWKIIGDFADNGGMPTYALEVSNQSPQHTVPSPGNPIDSGNNILYSPI
HPGSVGTPSTEYVTICNGVLQVPSPGQQLSPNSPQYSQLSPVEHSVGSPPYQGGGGGGGG
GDGGLSLSQFIHSQSPQYNQSPSPVMMVPSPSYQDNTSQLITQQYPQQQLQQQQQQQQQQ
QQQQQQQQQQLQQLQVQQQQQQQQQQTQQFQKQPQMGSQQAMQGVGESWVTVQHSMPLQP
QHSLPVPEIELPSMFNLGGIDQEPSLMDMLDIAGGQLDFNTVFNNDIKADYGGRKTSDSK
NKQRDRPLSTSQDVEELSKMMSEVCVEDPSSRTSRNPTSQREVSGQQSTPNVDVAFRVAV
SAAECLQAYAATGDISLLLATHRYLLAVQNNQGDTALHTAVSNKNMEAFNKILKASEKIN
PHDLLNAQNFASETALHQAVRGNEVTMVRRLVAALGCDVSIADAQGNTPIHCAAELQDHR
CLEALLTRPVNGTRSALPQAVNAYNYHGATPLHIAVTAGNLNCVKLLLSVGGQVHLCERK
RGSNPLHLAVMFGHHEIARFLLNNTNVTVEAGMFDGNTALHLAAQARDQEMCKILLMAHA
DPQTKNALSKGKKTAESEEEEETKEEEDEEEESEEECDGYTPVDYAGEDEQILAILRGEG
IIENAVAEGEVVAGKKEGPVHSALDSGIDISVTDIQEPDYTSEGEESVGKLSERVRGRLA
SHLSGDTWRHLAQLLDLDYMVHCWAKEPSPAELLLHPDNMKVSLGNTYPREPDYNHRCKC
LARNCQVFS
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccttgtaaacgatgccaggggagaaatttggagcacggcacagtagagtattgtgtg
gcaaggtgtggaccgagtcaagtgggatcgagtgctccggccccccgagggtcgccctcc
gtaaatattattggaactggggatttcccaagctgtggtaaacagtgcgccagcgcctgc
cttcatcacttgacggcgtttgggagtgtcacgggagggaagagacagtgctgtggtggg
atgaattccccatacagtggagagtctgcctctccatactcggaccagtcagttggtgtt
ccatccccacctacagttgttgctgccttcaatcggccttatgatgctgttcaccatgat
gggccatacatacatatcttggagcaaccacagtccaaatttcgttttcgttacaagagt
gaaatggtggggactcatggtcagttaaaggctgatcgagcagttaaaaatagggcaatt
tttccaacagtgaagctagcaaagtggaaccacggacctgctgttatgcgcctaacactt
ttcacagctgaggataatgtcaatcaacgaaaacgacacgtacatgagctctcagggaag
aattgtgataaagaaactggtatttgtgaagttgttgttgatgacaaatgtaactacact
gcagtttttcagaatcttgggatcattcacatagctaaacgagacactagagaaataatt
atgcaacgtaagagagatgaattaatggtccatgcacgtcttcgtaagccacattgtgcc
tatgaagaaataaaaagaagtatcacaccaacagatctcaaaaggatggatgatgaggca
gaggaggaggccaagagcatggatctgaacaaggtagtcttgagattccaagcattccag
tatgacaagagcattgagagctatcgcccaatcacccttcctgttgattcagaagtcgtg
tttaatcttaaaaatgctacaacgggagaacttaggattgtgcgaatgtctgcatgctca
gccccctgcactggagggacagaaatctggctgttggttgagaaagttagaagaaataat
gttcaaataaaattctttgaattggatcaaaatgatagagaagtctggactgcttacgga
gaattcactgatgctgatgtgcatcaccagtatgctattgtgttcaaaactccacgttat
cgaaatacgaacttaaatacgtcagttcgggtcaaagtgcaacttgagcgacccacagac
agagatacaagtgaacctcttgacttcacttacctcccagacagtttgaagcgctcgaga
gtgaacctagagaatacgttggaggaagggaagaggcactataatgaccctccagcaaag
agattaaactacaacccttataccagtgaagccatagatctgagtaacaatacacgaggt
tgtcgagggcaagaggattctgtgcaggcgcccgatttctggaagattattggagacttt
gctgacaatggcgggatgcctacgtatgccttggaagtttccaatcagtctccgcaacac
actgtgccttcgccaggaaatcctatagattctgggaacaatatattgtactctcccatc
cacccgggatcagttgggacacccagtacggaatatgtcaccatatgcaatggtgtgctg
caggtgccttcaccaggccagcagttgtcaccaaattccccacaatacagccaactgtct
ccggtcgaacactctgtgggttctcctccatatcagggaggaggagggggagggggtggt
ggtgatggtggattatctctctctcagttcatccactcgcagtcaccccagtataaccag
tctccttctccagtcatgatggtgccttccccctcgtatcaagacaacacttcacagctc
ataacccaacagtatccacagcaacaactgcaacagcaacaacaacagcagcagcagcaa
cagcagcagcagcagcagcaacagcagcaactgcagcagttacaagtacagcaacaacaa
cagcagcagcagcagcaaacacaacagtttcagaagcagccacaaatgggatcacaacaa
gcgatgcaaggtgttggggagagttgggtgactgtacaacacagcatgccactgcagcct
cagcatagtttgccagtcccagaaattgaattgccaagcatgtttaacttgggtggtatc
gaccaagagccatccctaatggatatgctggacattgcaggaggtcagctcgattttaac
acagttttcaacaatgatataaaggctgattatggaggcagaaaaacatcagattcgaag
aataagcagagagacagaccacttagtactagtcaagatgtagaagaactcagtaaaatg
atgtctgaagtatgtgttgaagacccatcatcacgcactagtagaaaccccacttcgcaa
agagaagtatctggtcagcaaagtacaccaaatgtggatgtggcattcagggtagctgtt
agtgctgcagagtgcttacaggcatatgcagctactggagacatttccttacttctagcc
actcatcgatatcttcttgctgtgcagaacaatcaaggtgacactgctctgcatactgca
gtcagtaacaagaatatggaagcttttaacaagatcttgaaagccagtgagaagattaat
ccacatgacctattaaatgctcaaaattttgcaagcgaaactgccctacaccaagctgtc
cgtggcaatgaagtaacaatggtgaggagactggtggctgctttgggatgtgatgtgagc
attgctgatgcacagggaaacacaccgatccactgtgcggcagaattacaggaccacagg
tgtcttgaagcacttttgactaggccagttaatggcactcgttcagcactgcctcaggct
gttaatgcttacaattatcatggtgcaactcctttacatattgctgtcactgctgggaac
ctgaactgtgtaaagctactattaagcgttgggggtcaagtacacttgtgcgaaagaaag
agaggctctaatcccctacatctggctgtaatgtttggccaccatgagattgcacgcttt
ttgttaaacaatacaaatgtgacagttgaagcaggcatgtttgatggtaatacagcacta
cacttagcagctcaagcacgcgatcaggagatgtgcaaaattcttcttatggcacatgct
gatccacaaaccaaaaatgctttaagcaaaggtaaaaagacggcagaatctgaagaggaa
gaggaaacgaaagaggaagaggacgaggaggaagaatctgaagaagaatgtgatggctac
actccagtagattatgccggagaagatgaacagattctggctatcttgcggggtgaaggc
attatagagaacgcagtagctgagggtgaagttgttgctgggaagaaggaaggcccggtg
cactctgctctggactctggcattgacatatcagttacagatatccaggaaccagactat
acgtctgagggagaagaaagtgtggggaagctgagtgaacgtgtgcgtggacgcctcgcc
agccatctcagtggagacacgtggcgacacctagcccagctcttggacttagactacatg
gttcactgctgggccaaggaaccttcgccggcagagttacttctacatcctgataacatg
aaggttagccttggcaatacctacccgcgggagcccgattataatcatcgctgtaaatgc
ctggccaggaattgtcaagtattctcatga
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