Procambarus clarkii (red swamp crayfish): 123774810
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Entry
123774810 CDS
T07930
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123774810 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123774810 (fand)
03041 Spliceosome [BR:
pcla03041
]
123774810 (fand)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123774810 (fand)
Spliceosome [BR:
pcla03041
]
Complex B
Other components
Prp19-related factors
123774810 (fand)
Complex C
123774810 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
NRDE-2
Cwf_Cwc_15
ARM_TT21_C
HAT
Motif
Other DBs
NCBI-GeneID:
123774810
NCBI-ProteinID:
XP_045625394
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All DBs
Position
68:complement(12229804..12288463)
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AA seq
854 aa
AA seq
DB search
MIMDAPTLIIETDDLQYEEELLRNPFSVKHWQRYIEHKKDAASEQLNKVYERSLLQMPGS
YKLWHQYLRLRMQQVKGRCITDPEFESVNNTFERALVFMHKMPRVWIDYCHFLMNQKKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMSYNIPETAGRVWRRYLKLCPEDTEDYISYL
ISIGRLEEAAKKYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEFYIISALFERARDVYEEGLRSVMTVRDFTQVFDAYAQFEELML
KKRMEEVGNEVEEEDEIDLELRLARYEDLMQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIIDARIIFQRATEVTYVK
VDDLASVWCEWAEMEIRHDNEEEALKLMKRATAPPPHKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENNYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYTGTKIERARDLFEQCLEKCPPSYARNLYLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLAIYNIYLQHAQQIYGVTRTREIYQEAIDDLPDEGAREMC
LRFAEMERKLGEIDRAREIYAYCSHICDPRITAEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASADTVAGTVSDLAPGAKDGMRMLEARAVAMNQLEEQNPPPS
HAPPAGGSKILFVRGTTTKRDDEVADTARTANPDEIDLDDEDDNDDDDDDDDDDDDLPQQ
REVPSAVFGQLKKE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgataatggatgcgccaacgttaattattgaaacggatgatctacaatatgaagaagaa
cttctccgaaaccctttttcagtaaaacattggcaacggtacatagaacacaaaaaagat
gctgcatctgaacagcttaacaaggtctatgaaagatcattgctgcaaatgcctgggagt
tacaaactttggcaccagtatctaagattacgaatgcagcaggtaaaaggtcgctgcatc
acggatccagagttcgagagtgttaacaacactttcgaacgtgccttggtattcatgcac
aagatgccccgtgtatggatagattattgccactttttgatgaatcagaaaaaaataaca
agaactaggaagacatttgaccgtgccctctgtgctttaccaataacacaacacaaccgc
atatggcctctgtatcttaagtttgtgatgtcttacaatattccagaaacagctggtaga
gtttggaggagatatctgaagctatgtccagaagatactgaggattacattagctatctt
atatccattggccgattagaagaagcagccaaaaaatatgaatggtgtgttaacacagac
tcctttacttccaagtatggcaaatcgaaacatcagttgtggtctgaactttgtgaactt
atctccaaaaatcctcaggaaactagcctgaaaaacgcagaagccatcattcgtcatggt
cttcagcgttacacggaccaagttggtatgctgtggaactctttggctgaattctatatc
ataagtgctctatttgaaagagctcgagatgtatatgaagaagggctgagaagtgtgatg
acagtgcgagattttacgcaagtgtttgatgcctatgctcagtttgaagaattaatgcta
aaaaaacgtatggaagaagtgggaaatgaagttgaagaagaagatgaaattgacctcgaa
ttacggttggctagatacgaagatctgatgcaacgcagaccacttttactcaattcagtt
atgctacggcaaaatccacataacgttttagagtggcagaagagagtaacactctatgaa
ggaaagcctaaaatgattgttgctacatatatggaagcagtaaaaacaattgatccaaaa
caagcaacaggaaagctgttttcactttgggttaactttgccaagttttatgaagaaaat
aaccaaattatagatgcacgaattatatttcagcgagctactgaagtaacatatgtaaag
gttgacgatttagccagtgtttggtgtgagtgggctgaaatggaaataagacacgacaat
gaagaagaagctctaaagcttatgaaaagagccacagcaccaccacctcacaaagttgca
tataatgatgagtcagaacccgttcagcggcgagtatacaagtcccttaagctgtggtca
atgtatgctgacttggaggaatgtcttggtacctttaaatcctgcaaggctgtgtatgat
agaattattgacttgcggattgctactccacaaattattataaattatggaatgtttctg
caggaaaacaactactttgaagaagcatttaaagcatatgaaaaaggcatctccttgttc
aaatggccatatgtgtatgatatttggaacacttacctcaccaagttccttgaacgttat
acgggaactaagatagagcgtgcaagagatctgtttgaacagtgtctagagaaatgtcct
ccaagctatgctagaaacctatacctcttatatgccaagatggaggaagagcatgggctg
gcaagacatgccatgcaggtatatagccgtgcaaccaaagcagtaccacctgaagagaaa
ttggctatatacaacatatacctccaacatgctcagcagatttatggtgtaacaagaaca
agagaaatttatcaggaagcaattgatgaccttcctgatgaaggtgcccgtgaaatgtgc
ttacgttttgctgaaatggaaagaaagctgggtgaaattgaccgtgctcgggaaatttat
gcctactgcagtcatatatgtgacccacgtatcactgcagaattctgggccaagtggact
gattttgaagttgctcatggcaatgaagatactatgaaggagctacttcgcatcaagaga
tctatgcaagctaaatacaacacccaggtgaacatgatgtctgcacaaatgttagcatct
gcagacacagttgcaggcactgtttctgatcttgccccaggtgctaaggatggcatgcgc
atgttagaggctcgtgctgtagccatgaaccagttagaggaacaaaatcctccaccatca
catgctccacctgcaggtggctccaaaatattatttgtacgaggcacaactaccaaaagg
gacgacgaggttgctgatacagctcgtactgcaaacccagatgaaattgacttagatgat
gaggatgataatgatgatgatgatgatgacgatgatgatgatgatgaccttcctcagcaa
cgagaagtaccatcagcagtgtttggccagctcaagaaggagtaa
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