Procambarus clarkii (red swamp crayfish): 123775002
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Entry
123775002 CDS
T07930
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04137
Mitophagy - animal
pcla04140
Autophagy - animal
pcla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123775002
04137 Mitophagy - animal
123775002
04148 Efferocytosis
123775002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcla03000
]
123775002
Transcription factors [BR:
pcla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
123775002
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS
PAS_3
PAS_9
PAS_4
HIF-1a_CTAD
HLH
Motif
Other DBs
NCBI-GeneID:
123775002
NCBI-ProteinID:
XP_069175079
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Position
92:14871791..15135714
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AA seq
1092 aa
AA seq
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MGHGKRRQKEPQTEHKDRRRNSEKRKEKSRDAARCRRGKESEIFTELASALPLPPQTVAQ
LDKASVMRLTLAFLKTRALCQAGFSKTGEGGGSKLDIEMDGLLLKALDGFLLVLSTDGDI
VFTSENIVAFLGLPQVDVMGQSLYEYTHPCDHEEVRELMSVKEHHEPRHAFLRLKCTLTA
KGRSVNLKSASYKVVQVSGELVGGEEQAWLVALGTPVPHPSNIEFPLDKQTFVSKHSLDM
KFTYVDDNVGEYCGYTTEELMGRSLYEMHHALDSDLVKDAYKTLRSKGQVETGRYRFLAR
AGGYVWLVTQATLIHGPKDNKPQYVVCLNYVVSGVESAGEILSELQLLCNSSSNIDTKHD
DGSSTTNNNSSSSSSSSSVSNKPAAPAAVAAPLVLNTTPAVPLPKLDTQPKVEERKSSTG
VRVNPAPPPVAATFKIFTPRTDDMTKGYLMFSDNDPHYTVLKEEPEDLTHLAPSVGDTCV
PLLEVPSLIPDHDHTCMLQEVSTLIPELDDMFTLDYHMPITSSDVLITTSPDSSEDREEA
QKYLYDESKLISGIKCMNSLSGGKILIDKSGCCTPSSDCGVSSPEPPKPLLSQAALSPIR
ERKQNTVLCGGSHPRTSTESLFTHLDEIRTPGSSESFGKLDLKLEERNMDSDEFEMRAPY
IPLSNEMLMLSPDDFLWGAEPEPLISPKHSASSSRDAKCCHSIIDKDDSNLAQLLRDTDP
HITGSGPGRNLHIENSTGTRSQYQQSKFLDGGGNFVDPNKVLPGHSGSKDDLEGSPGSTL
LVDPPPVMVQETVDPPPPLLTVDTHLVTLPVKRGHSPNSSPLLNHKKLCSPLCQRQHPTS
QHHPQDGAVPRQLQPGGVRLLETPNAPTMQQLLISKEPITVRGGRPGGGISASQNFITNK
SHSVLRNLLVSGRDETAGYSVSAPTSPAGTSSGNSTTSPSPHPLSDEAMGGKNVNGDGSI
VIGEPQAGSSGLASATLRIPRDKMTMLLAGNGGINADGQLMCSKLRLVTGNHSALMQAGH
FAFKLATNPNGQSGQGLVRRGRRQDPLLLMDPETTIPNLLDLTQQDYEVNAPASNCTLLQ
GADLLMALDQSL
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgggccacggcaagaggaggcaaaaggaaccccagacagagcacaaggacaggcgaagg
aacagtgagaagcggaaggagaagtctcgggatgcagcaagatgtcgacgcgggaaggag
agcgagatcttcacggagctggccagcgccctcccactcccgccccagacggtcgcccag
ctggacaaggcctccgtcatgaggctcaccctcgccttcctcaagacccgcgccctctgt
caggcagggttcagcaagacgggtgagggcggaggcagcaagctggatatcgagatggac
ggactgctgctcaaggcgctggacgggttcctcctcgtcctctccaccgacggcgacatt
gtcttcacctccgagaacattgtggccttcctcggcctgcctcaggtggacgtgatgggc
cagtcactgtacgagtacacacatccctgcgaccacgaggaggtgcgggagctcatgtct
gtcaaggagcaccacgaacctcgtcacgccttccttaggctcaagtgtactcttactgcc
aagggtcgctccgtcaacctcaagagtgcctcctacaaggtggtgcaggtgagcggggag
ctagtgggaggagaggagcaggcatggctggtggctctgggcactcctgtacctcaccca
tccaacatagagttcccgctggacaagcaaacattcgtcagcaagcactccctcgacatg
aagtttacctacgtcgatgacaacgtgggagagtactgcgggtacacaacggaggagctg
atgggccgctccctctacgagatgcaccacgccctcgactctgacctggtcaaggacgcg
tacaaaacattgagaagcaaaggccaggtggagaccggccgctacaggttcctggcccgg
gccggcggctacgtctggcttgtcactcaggccacactcatccacggacccaaggacaat
aagccccagtacgtcgtgtgtctcaactacgtcgtcagtggtgtagagtctgctggtgaa
attctgtcagagctgcaactgttgtgtaatagcagcagtaacattgacactaaacacgac
gatggcagcagcaccactaataacaacagcagcagcagcagcagcagcagcagtgtttcc
aacaagccagctgcacctgcagcagttgctgctcctctagtgttgaacaccacaccagcc
gtaccacttcccaagctggacacacaaccgaaggttgaggaacgaaagagtagcacaggt
gtaagagtgaacccagcaccacctccagttgcagccaccttcaagatctttactcctcgt
acagatgacatgaccaaaggataccttatgttctctgataatgacccacattacacagtg
ctgaaagaagagcccgaggacctcacccacttggcaccctcagttggtgatacatgtgtg
cctcttctagaggttccttccctaattcccgaccacgaccacacctgtatgctacaggag
gtctctacactaatccctgaactggacgatatgttcacccttgactatcacatgcccatt
actagttctgatgtattaatcacaacaagtcctgatagcagtgaagatcgagaagaagct
caaaaatacctgtatgatgaaagtaaactaatcagtggtatcaagtgcatgaacagttta
agtggaggaaagatactgatagacaagagtggttgctgtacgccatcgtcggactgtgga
gtgagctccccagaacccccaaaacctcttctaagtcaagctgcattatccccaatacgg
gaaaggaaacaaaatacggttttgtgtgggggcagccatcccagaacatcaacagagagc
ctcttcacacacttggatgagatccgcacaccgggctcatcagagtcatttggcaaactg
gatctcaaacttgaagaacggaacatggactcagatgagtttgagatgagagctccatac
attcctctcagtaatgagatgttgatgctgagccctgatgactttctgtggggagcagag
cctgagccacttatatcgccgaaacactctgcatcatccagccgagatgcaaaatgttgt
catagtattattgacaaggatgattccaacttggctcagctcctgcgtgacacagatcct
cacataactggtagtggcccaggaaggaacttgcacatcgagaattccacaggtactcga
agtcagtaccagcagagtaaatttctcgatggtggagggaattttgtagatccaaacaaa
gttctaccaggacactcgggaagtaaagatgatttggaaggatcaccaggtagtacatta
ctagttgatccgccacctgtgatggtgcaagagactgttgaccccccacctccattactt
actgttgatactcaccttgtaactttacccgtcaaacggggacactccccaaattcatct
cccctcctcaatcataagaaactgtgttcacccttgtgccagcgacagcatccgacctcg
caacaccatcctcaagatggagctgtgcctcgccaactacaacctggaggcgtgcgcctc
ctagaaacgcccaatgctccaactatgcaacaattattgattagcaaggagccaatcaca
gttcgaggaggacgtccaggcggaggcatttcagcctcccagaatttcatcacaaataag
agtcattcagtacttcgcaatcttctggtgagtggacgcgatgagactgctggctactct
gtgtcagctccaacaagccctgctggcacatcttctggaaactccactacatcccctagc
cctcatccattgagtgatgaggccatggggggaaagaatgtgaatggcgatggcagtata
gtcattggagaaccccaagcaggcagcagtggccttgcttctgcaacattacgcatccct
agggacaagatgactatgttgttagctggtaatgggggaataaatgctgatggccagttg
atgtgctccaaactgagattagtgactggaaaccacagtgccctcatgcaagctggccat
tttgcattcaaactggctactaacccaaatgggcagtctggccaaggcttggtgaggcga
ggacggcgacaggacccacttttgctgatggatcccgagactactattcccaacctgctg
gatctgacacagcaagactatgaggttaatgctccagccagtaattgtactttgctgcag
ggggcagacttactcatggcacttgaccagagcctttaa
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