Procambarus clarkii (red swamp crayfish): 138349523
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Entry
138349523 CDS
T07930
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138349523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
138349523
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138349523
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138349523
mRNA degradation factors
3'-5' decay
Ski complex
138349523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
nSTAND3
Ntox28
DUF3516
ATPase_2
Motif
Other DBs
NCBI-GeneID:
138349523
NCBI-ProteinID:
XP_045618795
LinkDB
All DBs
Position
56:22028299..22036753
Genome browser
AA seq
1214 aa
AA seq
DB search
MDALERLLGHLPPVLPSLKEQIEEYLLTPEKLPIHDPVHSRRWFPRHPNPTRLYSVSLLP
ASSCLEVERDPATGEISGLREIVNRDAGATAKNSLSMRRAPGPPEEIVRGSSTNFPFWPG
GFPEPALDKKSVEEEFQLDRSNYLTKHPRLSRGMDFEEPVNLIEEKEEEKPTPIAPELVV
SITDMLKVDENVLKIFDEKTEKVEKKELALTLEGLNEEDTTLVSNFNIEPPPKKDEFVLN
ISDGSKSTTVVVNTEWAENVDINSPVDDFNSQVPNPACTYPFELDTFQKQAILHLEKHDC
VFVAAHTSAGKTVVAEYAIALTLKHMTRAVYTSPIKALSNQKYRDFKIKFDDVGLLTGDI
QINPKASCLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINNAERGHVWEEVLIMLPST
VNIVLLSATVPNTIEFADWIGRIKKRKIYVISTSKRPVPLEHYLYTGTGGKTKDERFLLV
DASGTFITKGYNDAVAAKNERSKKSQQIQGPKQGRHHMGEKQEKNMWIGLVDHLSRRDLL
PIVAFTLSKKRCDSNATQLMSQDLTTNREKGEIHSFIKKCIDRLQGTDKELPQVIYMRNL
LLKGIGIHHSGILPILKEVVEMLFAKGLVKLLFATETFAMGVNMPARCVIFDSIRKHDGT
GFRDLVPSEYIQMAGRAGRRGLDTTGTVIILCKTDVPELSDLHRMMLGKPTKLESRFKLT
YSMILNILRVESISVEDMMKRSFSEVLQMANQSKYEEELKVAEMKLSKEPEFECMMCKDI
DEYYVSAREYVEQRKHVHKFILAFPGVMKAMTPGRILIISYGQYQFYLACLLKIDIKDKN
KLTVFILKNKNEPTSLSKEELKLKEALAACQEKFEVLEDTSDHTFLDIVPENLAAITNKV
IKVNGEKIIENIKKRQIPRFKADPPSESVMVVLNELQRINESGGENLVYLNFIHDLGVKE
ITAVSQIHILDILKKKVVERSCLECTQFREHFDHTFIKLNLREQVGRLKFLMSEEALQLH
PEYQMRIKVLKKLGYIENNNTVTLKGRVACEMGNHELMVTELVLENVFADSPVEIIASLL
SSMVFQQKNCSEPNLTAELKKGIKQFKSVAQRIGEVQKECGLPEPVGDFVDQFNFGLTEV
VYEWAHGMPFNKIMELTDVQEGITVKCIQRLDETLKDVKNAAHIIGDPNLREKMEAASTT
IKRDIVFTPSLYTQ
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggatgcactagaaagactccttggccacttgcccccggttctgccaagccttaaagaa
caaatagaggaatatcttttgacccccgagaagctacccatccatgaccctgttcattcc
agacgatggtttcccaggcacccaaatcccactcgtctctacagtgtttctttgttacca
gcaagttcgtgtcttgaagtcgagcgggaccctgccacgggtgaaatttctgggcttcgt
gaaattgtaaacagggatgcaggagctacagctaaaaattctctctccatgagacgtgca
ccaggtcctcctgaggagattgttaggggctcctcgactaactttcctttctggccaggt
ggcttcccagaaccagctctggataagaagtctgttgaggaagaatttcaactcgatagg
agtaattatctcacaaagcatccaagactatctcggggaatggattttgaagaaccagta
aatttgattgaagaaaaagaggaagaaaaaccaaccccaattgcacccgaattagttgtt
agcataacagatatgctaaaagtggatgaaaatgtacttaaaatctttgatgagaaaact
gaaaaggttgaaaagaaagaacttgctttaactttagaagggctgaatgaagaagacact
acacttgttagcaattttaacattgaaccacccccgaaaaaagatgaatttgtattaaat
ataagtgatggttcaaaatctacaactgtggtggttaacacagagtgggcagaaaatgtt
gatattaattctccagttgatgactttaactcgcaagttcccaaccctgcctgcacatac
ccatttgaactagatacatttcaaaagcaagcaattttgcacttggagaagcatgattgt
gtgtttgtagctgcccacacctctgctggaaaaacagtagtggctgaatatgcaattgca
ttgacattaaaacatatgactcgagcagtttatacttctccaattaaagcactttcaaat
cagaaatacagagattttaaaataaaatttgatgatgtgggtcttttgacaggtgatatt
caaattaacccaaaagcatcttgtttaatcatgacaacagaaattttacagtctatgcta
tacaatggcagtgatttgataagagacttagagtgggttatttttgatgaagttcactat
attaataatgctgaaagaggccatgtatgggaggaagtgttaataatgttgcctagtact
gtcaatattgtgctactgtctgcaacagtgcccaatacaattgaatttgctgattggatc
ggtagaattaagaaaagaaaaatctatgtaattagcaccagtaagcgtcctgtaccttta
gagcactatttgtacactggcactggtggtaagaccaaagatgaacgcttcttgttagta
gatgctagtggcacctttatcactaagggttacaatgatgccgtggcagcaaagaatgaa
aggagtaagaaaagtcaacagattcaggggccaaagcaaggaagacatcatatgggagaa
aagcaggagaaaaatatgtggattggtcttgttgaccacttgagtagaagagacttgttg
cccattgtagctttcactctgtctaaaaagcgatgtgatagtaatgctactcagctgatg
agccaagacttgacaacaaatagagaaaagggggagatacattcttttattaagaagtgt
atagatagacttcagggaacagataaagaattacctcaggtcatttacatgagaaattta
ttacttaaaggcattggcattcaccacagtggcattcttcccatcctgaaggaagttgta
gaaatgctgtttgccaaaggacttgtaaagcttctgtttgcaacagaaacatttgcaatg
ggtgtaaacatgcctgcaagatgtgtgatatttgattcaattaggaaacatgatggaacc
ggtttccgtgacttagtaccgagcgaatatatccagatggcaggccgtgctggccgtaga
ggcttggatactaccgggacagttattattctgtgtaaaacagatgtaccagagttatct
gatcttcatcggatgatgttggggaagcccaccaagttggagtcaaggttcaagctaacg
tattctatgatacttaacattttacgtgttgagagcatcagtgtagaggatatgatgaaa
agatctttttctgaagttttgcagatggcaaaccagagtaaatatgaagaggaactgaag
gttgctgaaatgaagttaagtaaggaacctgaatttgaatgcatgatgtgtaaagacata
gatgagtattatgtttctgccagggagtatgtggagcaacggaaacatgttcataaattt
atccttgcatttcctggtgtaatgaaggcaatgacaccaggaaggattctcattatatcc
tatggccaatatcagttctatttggcctgtttgctgaaaattgatattaaggataaaaat
aaattgactgtatttattttaaaaaacaaaaatgaacctacttcattgtcaaaagaagaa
cttaagttaaaggaagctctagcagcatgccaggagaagtttgaagttcttgaagacact
tcagatcacacattcttagacattgttcctgagaatttagctgcaatcacaaataaggtt
attaaggtaaatggagaaaaaattattgaaaatataaagaagcggcagatcccaagattt
aaagctgacccaccttctgaatccgttatggtcgtattaaatgagttgcagcgtataaat
gaatctggtggggagaaccttgtgtatctcaatttcatacatgatcttggtgtcaaggaa
ataacggcagtatctcaaattcatatcctagatatactaaagaaaaaagtagtggagaga
tcatgcctagagtgcacacaattcagggagcacttcgatcatacctttattaagttgaac
cttcgagaacaagttggtcgtttgaaattcctcatgtctgaagaggctcttcagttacac
cctgagtaccaaatgagaattaaggtacttaaaaagcttggttacattgaaaataacaat
actgtaacactgaaaggcagagttgcatgtgagatgggaaaccatgagctaatggtaact
gaactagtattagaaaatgtgtttgcagatagcccagtggaaataattgcttcattgctc
tccagtatggtattccaacagaaaaactgcagtgagccaaatttgacagcagagctgaag
aaaggaataaagcaatttaagagtgtggcacaacgtattggagaggttcagaaggagtgt
ggacttccagagccggttggtgactttgtggatcaattcaactttggcttgactgaggtc
gtttatgagtgggctcatggaatgccatttaacaaaataatggaattgaccgatgtccaa
gaaggaatcactgtgaagtgtattcaacgattagatgaaacgctaaaggatgtaaaaaat
gctgctcacatcattggtgatcctaatcttcgggagaaaatggaggctgcgtcaacaact
ataaagagagatattgtctttactcctagcttgtacactcagtaa
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