Paraprevotella clara: PC1C4_01800
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Entry
PC1C4_01800 CDS
T08732
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pclr
Paraprevotella clara
Pathway
pclr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pclr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC1C4_01800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pclr03019
]
PC1C4_01800
03400 DNA repair and recombination proteins [BR:
pclr03400
]
PC1C4_01800
Enzymes [BR:
pclr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PC1C4_01800
Messenger RNA biogenesis [BR:
pclr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC1C4_01800
DNA repair and recombination proteins [BR:
pclr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PC1C4_01800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BDI73458
LinkDB
All DBs
Position
complement(232595..234421)
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AA seq
608 aa
AA seq
DB search
MQNILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVIS
PLISLMKDQVEGLRANGVPAAALNSMNDEAESVRVRAACLRGELKLLYISPERLMLELPY
LIRDMKVSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFPDVPIVALTATADRLTREDIQ
KQLALSDPVVFISSFDRPNLSLDVKRGYQKKDKDRAILELIARHPDDCGIIYCLSKKTTE
SVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCATVAFGMGIDKSNVRFVIH
YNLPKSIEGFYQEIGRAGRDGLPAETVLFYSLGDLVQLSKFAQESGQREINMEKLRRMQE
YAESDVCRRRILLNYFGEHTDGDCGNCDVCKNPPQRFDGTILAQKALSAIVRADEQVSAR
TLTDILRGNFSPEVTKGHFETLKTFGVGRDVPPRDWQDYLMQMLQNGLFEIAYEEGNHLK
LTESGRQVLYKGRKVELAVIRREEKPQKRGRKSLRPVAAPVLFTGGRPATAPLAADSREL
FEALRALRKRLADAQGFPPYIVMSDKVLQNLCEARPQTVEAFGTVSGIGEFKKEKYGKDF
VEVIRRFK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatatattaaaacggtattttggctttgactccttccgtcctttacaggaggac
atcatcgggaatattctggccggacatgatgtcgtggtgctcatgcctaccggtggcggg
aagagcttgtgttatcaggttcctgcgttgatgagggaagggacgacagtcgtgatatct
cctttgatatccttgatgaaagaccaagtggagggactgcgggccaatggagtgccggcg
gcggcactgaacagcatgaatgacgaggcagagagtgtcagggtgcgtgcggcctgtctg
agaggggagttgaaactgttgtatatttcgcccgaacgcctgatgttggagcttccttat
ctgataagggacatgaaagtatccttgtttgcagtggacgaagcgcactgtatctcgcaa
tgggggcatgatttccggccggagtatgcccaactgggattgttgaggcagacgtttccc
gatgtgccgatagtggccttgaccgctacggccgaccgtttgacaagagaggatatacag
aagcagttggctttgtccgacccggtcgtgttcatttcttctttcgaccgtccgaacctc
agtcttgacgtgaaacgggggtatcaaaagaaagacaaggaccgtgccatattggaactt
atcgcccggcatcccgacgattgcggaatcatatattgcctgagcaagaagaccaccgaa
agcgtggcggagatgcttcgtgggcatgatatagcagccgtggcctatcatgccgggctt
ccgactgaagagcgcgagagggcacaggatgattttatccacgaccgtgtgcaggtggtg
tgtgccacggtggcgttcggtatgggcatagacaaatccaatgtccgttttgtgattcat
tataatttgccgaaaagcatcgaaggattttaccaggaaatcggacgtgccggtcgcgat
ggtcttccggcggaaacggtattgttttattcattgggcgatttggtgcagttgtccaag
tttgcccaagagagcggacagcgggaaatcaacatggagaagctgcgccggatgcaggaa
tatgcggaatccgacgtgtgccgtcgtcgcatcttgctgaattatttcggggaacatacc
gacggggattgcggaaattgcgatgtgtgtaagaaccctccgcaacggttcgacggtacg
atattggcccagaaagccttgagtgccatcgtgcgggcggatgaacaggtcagtgcccga
acacttacggacatcctgcgcggcaatttcagtccggaggtgacgaagggacattttgaa
acgctgaagactttcggggtggggcgcgacgtgccgccgcgcgattggcaggactacctg
atgcagatgttgcagaacggtctgttcgagatagcttacgaagaaggcaaccacctgaag
ttgaccgaaagcggtaggcaggtcttatataaaggtaggaaagtggaactggccgttatc
cgcagggaggagaagccgcagaagcgcggacgcaaatcccttcgtccggttgcggctccc
gttttgtttacgggtggtcgtccggcaacggctccgttggcggcagacagccgggaactg
tttgaggctttgcgggctttacgcaaacgtttggccgatgcacaaggttttccgccctat
atcgtcatgtccgacaaggtgttgcagaatctttgtgaggctcgtccgcaaacggtggag
gcattcggtacggtcagcggcatcggtgagtttaaaaaagaaaagtacgggaaagacttt
gtggaagtgattcgccgtttcaagtga
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