| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
pclr Paraprevotella clara
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pclr00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PC1C4_02650 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:pclr03021]
PC1C4_02650 (rpoC)
03400 DNA repair and recombination proteins [BR:pclr03400]
PC1C4_02650 (rpoC)
Enzymes [BR:pclr01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PC1C4_02650 (rpoC)
Transcription machinery [BR:pclr03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PC1C4_02650 (rpoC)
DNA repair and recombination proteins [BR:pclr03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PC1C4_02650 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(348271..352548)
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| AA seq |
1425 aa
MAFRKESKIKSNFTKITIGLASPEEILENSYGEVLKPETINYRTYKPERDGLFCERIFGP
TKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIALVVPVAHIWYFRSLPNKI
GYLLGIPTKKLDAVIYYERYIVIQPGVLAEEGIAANDLLTEDEYLDYLEKLPKENQYLDD
SDPNKFIAKMGAEAIYDLLLRLDLDKLSYELRDSANADTAQQRKTEALKRLQVVESFRAS
RGRNKPEWMIMKILPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMGECGLPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAILEAQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKLRPGSKGEGLTFY
GPEEAIIAYNEKRVDIHAPIKVVVKDLNANGELEKKMVETSVGRVIVNEIIPEEVGYFND
IISKKTLRGIITDVIKTVGVARACEFLDGIKNLGYRMAYVGGLSFNLGDIIIPEEKEELV
RRGNEEVERIANDYGMGFITDNERYNQVIDTWTHVNNDLSKVLMKTMKEADQGFNAVYMM
LDSGARGSAGQISQLSGMRGLMAKPQKAGAEGAQIIENPILSNFKEGMSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLVCTALKNGDEVISSLYERI
LGRVSVHDIINPTTGKLIVSAGEEITEDKAQEIEDSPIESVEIRSVLTCESRKGVCMKCY
GRNLATSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGVASNAAANASIVAKYDSKVE
FEELRTVDITDETGNAAKMVVGRLAEVRFVDVNTDIVLFTQNVPYGSTLYVNEGDKVEKG
KLIAKWDPFNAVIVTETPGKIQFEDVVEGVTYRVEADETTGLREMIIIESKDRTKVPSAH
ILDENGELIRTYNFPIGGHLAIEDKQIVKAGDVLVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEITMGKLKRGNREIIVTSKLGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEIQDVYRLQGVKINDKHFEVIVRQMMRKVQIDE
PGDTRFLEQQIVDKLDFAEENDRIWGKKVVVDAGDSETMQKGMIVTARKLRDENSTLKRK
DLKLVQVRDAMPATSIQILQGITRAALQTSSFMSAASFQETTKVLNDAAINGKTDKLEGM
KENVICGHLIPAGTGLREFGKIVVGCKEEYDRLMANRKSILDLDE |
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| NT seq |
4278 nt +upstreamnt +downstreamnt
atggcttttagaaaagaatctaaaataaagagtaactttacgaagataaccatcggattg
gcttcgcccgaagaaatcctggaaaattcgtatggtgaggttttgaaacccgaaaccatt
aactatcgtacctataaacccgaacgtgacggtttgttctgcgagcgtatttttggtccg
acgaaggattatgaatgccattgcggaaagtataaacggattcgttataagggtattgtc
tgcgaccgttgtggcgtggaagtaacagaaaagaaggtacgtcgcgaacgttcaggacac
attgcattggtggtgcctgtggctcatatctggtattttcgttcgttaccgaacaaaatc
ggttatctgttgggaataccgacaaagaagctggatgcagtcatttactacgaacgttat
atagtcattcagccgggcgtgctggccgaagaaggaatcgcagccaatgacttgttgacc
gaagatgaatatttggattatctggagaaacttcccaaagagaaccagtatttggatgat
tcggatcctaataagttcatagccaagatgggtgcagaggccatttatgaccttttgctc
cgtttggatttggataaattgtcatacgaattgcgtgacagtgccaatgccgatacggcc
cagcagcgtaagaccgaagccctgaagcggttgcaggtggttgagtctttccgtgccagt
cggggacgcaataagcccgaatggatgattatgaaaatccttccggtgattccgcccgaa
ctgcgtccgttggttccgttggatggcggccgttttgccacttccgacttgaacgacttg
tatcgtcgtgtcattatccgtaacaaccgtctgaagcgactgattgaaatcaaagctccc
gaggtgattttgcgtaatgagaaacgtatgttgcaagaggccgtggacagcttgttcgac
aactcccgcaagtccagtgcggtaaagacggatgccaaccgtcctttgaagtccctttcc
gattcgttgaaaggtaagcaaggccgtttccgtcagaacctgttgggtaagcgtgtggac
tattcagcccgttcggttatcgttgtaggaccggagttgaagatgggagaatgtggtctg
cctaaattgatggccgcagaactttataagccgttcatcatccgtaagcttatagaacgc
ggtatcgtgaagaccgtgaagtctgccaagaagattgtagaccgcaaggagcctgtgatt
tgggatattttggaatacgtgatgaaaggacacccggtgttgttgaaccgtgctccgaca
ttgcaccgcttgggtatccaggctttccaacctaagatgatagaaggtaaggctatccag
ttgcatccgttggcctgtacggcgttcaatgccgacttcgacggtgaccagatggctgtg
catttgcctttgagcaacgaagcgattctggaagcgcagattttgatgttgcagtctcac
aatatcctgaatccggcaaacggcgcgccgattacggtgccttctcaggatatggtgttg
ggcttgtattatattaccaagctccgtccaggttctaagggcgaaggtttgacattctat
ggccccgaagaggctatcattgcttacaatgagaagcgtgtagacattcatgcgcctatt
aaagttgtggtaaaggacctgaatgcgaatggcgagctggaaaagaagatggtggaaacg
tctgtaggccgtgtgattgtcaacgaaatcataccggaagaagtcggttatttcaatgac
atcatttccaaaaagactttgcgcggcatcatcaccgacgtgatcaagacggtaggtgtg
gctcgtgcctgcgaattcctggacggtatcaagaatctgggttatcgtatggcatacgtg
ggcggtttgtctttcaacttgggtgatattatcattccggaagaaaaagaggaactggtt
cgtcgcggaaacgaagaagtggaacgcattgccaatgattatggtatgggtttcatcacg
gacaacgaacgttataaccaggtcatcgatacttggacacacgtcaacaatgacctttcc
aaggtcttgatgaagaccatgaaagaagccgaccagggtttcaatgccgtatatatgatg
ttggattccggagcccgtggttctgccggacagatcagccagctttccggtatgcgtggt
ttgatggccaagccccagaaagccggagccgaaggtgcccagattatcgaaaacccgatt
ctttccaacttcaaggaaggcatgagcgtgttggagtacttcatttctacccacggtgcc
cgtaagggtttggccgatacggccttgaagacagccgatgccggttacttgacgcgtcgt
cttgtagacgtatcccacgacgtgattatcacggaagaggattgcggtacgttgcgcggt
ctggtatgtacggctttgaagaacggcgatgaagtcatttcttcactttacgaacgtatt
ctaggacgtgtgtccgtgcatgatattatcaatcctacgacgggtaagttgattgtttcc
gccggggaggaaatcacggaagacaaggcacaggaaatcgaagactctccgatcgagagt
gtggaaatccgttccgtattgacttgcgagagccgtaagggagtctgcatgaagtgctat
ggccgcaacttggctacgagccggatggtacagaaaggcgaggcggtcggcgtgattgcc
gcccagtccatcggtgagccgggtacacagttgacgttgcgtacgttccatgccggtggt
gtggcttcgaatgcggcagccaatgcatctatcgtcgcgaagtacgattcgaaggtagag
ttcgaagagttgcgtacggtagatattaccgatgagaccggaaatgcagccaagatggtg
gtaggacgtttggccgaggtccgcttcgtcgacgtgaataccgatattgtcctcttcacg
caaaatgtgccttacggttctactttgtatgtgaacgaaggagataaagtagagaaaggc
aagctgatagccaagtgggatccgtttaacgcggttatcgtgacggaaactccgggtaag
attcagtttgaagacgtggtagaaggtgtgacttatcgtgtggaagccgacgagacgaca
ggtctgcgcgagatgattatcatagagtcaaaagacaggacgaaggttccttcggctcat
atcttggacgagaacggagagctgattcgtacgtataacttccccatcggcggacacttg
gctattgaggacaagcagattgtcaaagccggagacgtattggtgaagattccgcgtgcc
gtaggcaaggccggcgacatcacgggaggtcttccgcgtgtgaccgagttgttcgaagcg
cgtaatccgtctaatcccgctgtggtttcggaaatcgatggtgagatcacgatgggtaag
ctgaaacgcggtaaccgtgagattatcgtcacttccaagttgggtgaagtgaagaagtat
ctcgtaccgttgtccaagcagattctggtacaagagaatgactatgtacgtgccggaact
ccattgtcagatggcgccactacgccagccgacattttggccattaaaggtcctacggca
gtgcaggagtatattgtgaacgagatacaggacgtgtaccgtctgcagggtgtgaagatt
aacgacaagcactttgaggtgattgtccgtcagatgatgcgtaaggtgcagattgacgaa
ccgggcgacactcgattcttggagcagcagattgtggacaaactcgatttcgcggaagag
aacgaccgcatttggggcaagaaagtcgtggtggatgccggtgactcggaaacgatgcaa
aaaggcatgattgtgacggcccgtaagttgcgtgacgagaattctacgttgaaacgtaag
gatttgaagttggtgcaggtacgtgacgccatgccggccacctcaatccagattctgcaa
ggtattacccgtgcggcactacagacttcgagcttcatgtcggcagcttccttccaggaa
acgacgaaggtgctgaatgacgcggccatcaatggaaagaccgataaactcgaaggtatg
aaggagaacgtcatctgtggtcatctgataccggcaggtacgggacttcgtgagttcggc
aagattgtcgtaggctgcaaggaggagtacgaccgcctgatggccaatcgtaagtctatc
cttgatttggatgagtaa |
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