KEGG   Paraprevotella clara: PC1C4_08730
Entry
PC1C4_08730       CDS       T08732                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pclr  Paraprevotella clara
Pathway
pclr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pclr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PC1C4_08730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pclr03021]
    PC1C4_08730
Transcription machinery [BR:pclr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PC1C4_08730
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF GerE HTH_11 HTH_23 Sigma70_r4 HTH_24 HTH_38 HTH_3 HTH_ParB HTH_10 PF0610-like_N HTH_36 HTH_19 HTH_AsnC-type HTH_40 IbrB_C Fe_dep_repress HTH_28 DUF5798 PhyR_sigma-like DUF3489
Other DBs
NCBI-ProteinID: BDI74151
LinkDB
Position
1198157..1198711
AA seq 184 aa
MDNLVFQIQQDSEYAFKQLYQIYYAKVVSFITGIIKERDIAKDLAQDIFINLWLNRKKLD
ISKNIQNYIFVASRNAAINYLKKELAFSHGTIEAIQADVRTSDTAEDNLFAKEISLLIEM
VVSEMPKQRQLIYRLSKEQGLSNEEIASKLGISKRSVENQISMALKEIKRAISFYLIFLL
CMLS
NT seq 555 nt   +upstreamnt  +downstreamnt
atggataatttagtttttcaaatccaacaagatagcgaatatgcgttcaaacaactctat
caaatatattacgccaaggttgtatcctttattacgggaatcataaaggagcgtgatata
gccaaggatttggcacaagacatatttatcaatctatggctcaaccggaaaaagttggat
atatccaaaaacatccaaaactatatttttgttgcatcccgtaatgcggcaataaattac
ctgaagaaggaactggccttttcacacggcacgatagaggccatacaggcggatgtgagg
actagtgatacggcagaagataatcttttcgccaaagaaatcagcttgttgatcgaaatg
gtggtttcggaaatgcctaaacagcggcaactcatctatcgtttgagcaaggaacaaggg
ctgagcaacgaggaaatagcctcaaaattgggaataagtaaaagaagtgttgagaatcaa
ataagcatggcattaaaagagataaaacgagctatttctttttaccttatatttttatta
tgtatgttatcatga

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