Paraprevotella clara: PC1C4_12670
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Entry
PC1C4_12670 CDS
T08732
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pclr
Paraprevotella clara
Pathway
pclr03410
Base excision repair
pclr03430
Mismatch repair
pclr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pclr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PC1C4_12670
03430 Mismatch repair
PC1C4_12670
03440 Homologous recombination
PC1C4_12670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pclr03400
]
PC1C4_12670
DNA repair and recombination proteins [BR:
pclr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PC1C4_12670
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PC1C4_12670
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PC1C4_12670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
BDI74545
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Position
complement(1760861..1762585)
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AA seq
574 aa
AA seq
DB search
MNYKWKLEPPTPEKLEAAERLAKELNISPILGRLLIERNITTVADAKKFFRPSLTELYDP
FMFTDMDKAVERLNKALGRKERIMVYGDYDVDGCTAVALVYKFLQQYYSNIDYYIPDRYE
EGYGVSVKGIDYAYESGVKLIIVLDCGIKAVDEIAYAKEKGIDFIICDHHVPDEILPPAV
AILNAKRFDSTYPYPHLSGCGVGFKFMQAFAQSNGIEFSQLIPLLDLCAVSIASDIVPIM
GENRILAYHGLRQLNANPSIGLKAIIDVCGLSERELTISDIIFKIGPRINASGRIQNGKE
AVALLVEKDYQTAHEMAEQINRYNDMRKDLDKSMTEEANSIVEKLDKQSEQRSIVIYNEE
WHKGVIGIVASRLTEIYYRPSVVLTRTDNLATGSARSVSGFDVYKAIESCRDLLENFGGH
TYAAGLSMKVENVPEFHRRFEAYVETHILPEQTSAILNIDAQIDFKDITHKFHHDLKKFN
PFGPDNTKPLFCTQHVYDYGTSKVVGREQEHIKLELVDNKSNNVMNGIAFGQSSQARYIK
TKRSFDICYTIEENTHKRGEVQLQIEDIRPSGKE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaactataaatggaaattagaacctcctacaccggaaaaactggaagcggctgagaga
ctggccaaagagctgaacatcagccctattctcggtcgtctcttgatagaacgcaatatc
acgacggtggcggatgccaagaaattcttccgtccctcgctcacagaactgtacgacccg
ttcatgtttaccgatatggacaaggctgtagagcgtctgaacaaagctttgggacgcaag
gagagaatcatggtttatggagattatgacgtagacggctgcacggctgtagcattggtc
tacaagttcctgcaacaatattattccaatatcgactactatatccccgaccgttacgaa
gaaggttatggcgtgtcggtcaaaggaatcgactatgcatacgaaagcggtgtaaaactg
attatcgtgctcgactgcggcatcaaggccgtagatgagattgcatacgccaaagaaaag
ggtatcgacttcattatctgcgaccaccacgtaccggacgaaatccttccgccggccgtg
gcgattctgaatgccaaacggttcgactcaacttatccctatccccatttgtccggctgc
ggcgtgggtttcaagttcatgcaggctttcgcacaaagcaacggcatcgagttcagccaa
ctaatcccgttattggacctttgtgccgtcagcatcgcgtcggacatcgtgccgattatg
ggagaaaaccgtatcctggcttaccacggtctacgacaactgaatgccaacccgagcatc
gggctcaaggccatcatcgacgtatgcggcttgtcggagcgggagctgaccatcagtgac
atcatcttcaaaatcggaccgcgtatcaatgcttcgggacgcatacaaaacggaaaagag
gccgtggcgttgctcgtggaaaaagactatcagacggcgcatgaaatggcggaacaaatc
aaccgctacaacgacatgcgcaaagacttggacaagtctatgacggaggaggcaaacagt
atagtagagaaactggacaaacaaagcgaacaacggtctatcgtcatttacaacgaagag
tggcacaagggggtcatcggcatcgtggcttcacgactgacggaaatctactaccggcct
tcggtcgtactgacccgcacggacaatctggccacggggtcggcgcgttccgtttcggga
ttcgatgtctacaaggctatcgaaagttgccgggatttattggagaatttcgggggacat
acgtatgcagcgggcttgtccatgaaagtggaaaacgtaccggaattccaccggcgcttc
gaagcttacgtggaaacacatatcctgccggaacagacttcggccatattgaacatcgac
gcgcaaatagacttcaaagacatcacgcacaagtttcaccacgaccttaaaaagttcaat
cctttcgggccggacaatacgaaaccgctgttttgtacgcaacatgtatatgactacgga
acgagcaaggtcgtaggacgcgaacaagaacatatcaaattggaattggtggacaacaag
agcaacaacgtcatgaacggtatcgctttcggacaaagttcacaggctcgttacatcaag
accaaacgttctttcgatatttgctacactatcgaagaaaatacgcataaacggggtgaa
gtgcagcttcagatagaggacatccgcccctccggtaaagaataa
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