Pedobacter cryoconitis: AY601_0256
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Entry
AY601_0256 CDS
T04341
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AY601_0256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_0256
03019 Messenger RNA biogenesis [BR:
pcm03019
]
AY601_0256
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AY601_0256
Messenger RNA biogenesis [BR:
pcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AY601_0256
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
ATPase_2
OB_RNB
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
AMP97225
UniProt:
A0A127V7K3
LinkDB
All DBs
Position
complement(290354..292087)
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AA seq
577 aa
AA seq
DB search
MFNKTELNEKLTAELRELAKSQGILNADDLRKAELVEVIHQISEQQPEAAPATAVPEAAI
SNDVVKENPAKTAKPKAPKINTAEKPLRKRTRIPKDEAEQAPATSNGNNFNRASLFDTPQ
QEEQQVQPETTPASATNGNVQSETPAPVAVPAPRTEERQPVQPAVTAPAEIKKSKPVRED
NRPKNNNNNGNNSNQKQNENSYSNLDFDNTITNEGVLEIMPDGYGFLRSADYNYLSSPDD
IYVSQSQIKLFGLKTGDTVKGSIRPPKEGEKYFPLVRVETINGRLPADVRDRVPFDYLTP
LFPTERLNLFTETNNYSTRIIDLFTPIGKGQRGLIVAQPKTGKTNLLKEVANAIAKNHPE
VYLIILLIDERPEEVTDMARSVRAEVIASTFDEPAERHVKIANIVLEKAKRLVECGHDVV
ILLDSITRLARAYNTTAPASGKILSGGVDANALHKPKRFFGAARNIERGGSLTILATALT
DTGSKMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAIDITASSTRRDDLLHDRDTLQRVW
ILRNHLADMNAQEAMEFVQAQIKNTKTNEEFLISMNS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaaacagaattaaatgaaaaacttactgcagaattgcgggagttagcaaaa
tctcaggggatcttgaatgctgatgatttgcgtaaagctgaattggttgaagttattcat
caaatcagtgaacaacaacctgaagctgcacctgccactgctgttcctgaagcagcaatc
agcaatgatgttgtcaaagaaaatccggcaaaaacagctaaaccaaaagctccgaaaatc
aatactgcagaaaaaccgcttagaaaaaggacacgtattcctaaagacgaagcagaacaa
gctccggcaaccagcaacggaaataacttcaacagagcatccctgttcgatacaccgcag
caagaagagcagcaggtacagcctgaaactacacctgcatcagcaactaatggaaatgtt
cagtcagaaactccggccccggttgctgttccagcaccaagaactgaagaaagacaacct
gttcagccagctgttacagcacctgcagaaattaagaagtcaaaacctgtaagagaagat
aacaggccaaaaaacaacaataacaacggtaacaatagcaatcagaagcagaacgagaac
agctattcaaatcttgatttcgacaataccatcacaaatgaaggtgtattggaaattatg
cctgatggatatggtttcttaagatcggcagattacaattacctttcttcacctgatgat
atttacgtttcacaatctcagatcaaacttttcggtttaaaaaccggagatacagttaaa
ggaagtatccgtcctccaaaagaaggcgaaaaatatttcccactggtcagagtagagacg
atcaatggccgtttaccagctgatgtaagagatagagtccctttcgactacctgactcca
ctattcccgacagaaagattaaatcttttcacagaaaccaataactactctacccgtatc
attgacttatttaccccaatcggtaaaggtcagcgcggtttaatcgttgcacaacctaaa
acaggtaaaacaaacctgttgaaagaagttgccaatgcaattgctaaaaaccaccctgaa
gtttacctgattattttactgatcgatgaacgtccggaagaggtaacagatatggcaaga
agcgtacgtgcagaagtcattgcttctacatttgatgagccagctgaacgtcatgtgaaa
attgccaatatcgtattggaaaaagcaaaacgtttagtagaatgcggacacgacgttgtc
atcctgctggattcaattacacgacttgcacgtgcttacaatacaactgctcctgcatct
ggtaaaatcttatctggtggtgtggacgcaaacgctttacataaaccaaaacgtttcttt
ggtgctgcccgtaacattgaaagaggaggatctttaactattttagcaactgcattaact
gatacaggttctaaaatggacgaagtaattttcgaagaattcaaaggaacaggtaatatg
gaattacaattagaccgtaaattgtctaacaaacgtatcttccctgctatcgatatcacg
gcatcaagtacccgtagagacgacttattacatgacagagataccttacaacgcgtatgg
atcttacgtaaccaccttgcagatatgaatgcgcaggaggctatggaatttgttcaggca
caaatcaagaacacaaaaactaacgaagagttcttaatttctatgaacagctag
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