Pedobacter cryoconitis: AY601_0509
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Entry
AY601_0509 CDS
T04341
Name
(GenBank) RNA polymerase, sigma-24 subunit
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AY601_0509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_0509
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AY601_0509
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_40
Sigma70_ECF
GerE
HTH_10
UPF0122
RPA_C
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AMP97464
UniProt:
A0A127V831
LinkDB
All DBs
Position
574956..575549
Genome browser
AA seq
197 aa
AA seq
DB search
MNDNSALPDSDLVIRLRNGEEVAFKIIFDRWFKKLYYFSFRYLKSKEEAEEMVQETMLQL
WVTREKLDERYPVSSYLYTIVKRLSLNRLKQIASSKSAAEHHFVNLKVTVNTTEDALSLS
ELKRITAEALALMPEKQQQVYRMSRNEGLSLDEIAFSLGILKNTVKKHLSEALKMIRIHF
ASRYYLLVVSLVSIINK
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataatagcgctttacccgattcggatctggttataagattaaggaatggggaa
gaggttgcctttaaaattatctttgacagatggtttaagaaattgtattatttcagtttc
agatacctgaaaagtaaggaggaagcagaagagatggtacaggagacgatgctgcagttg
tgggttacccgtgaaaagttagatgaaagatatcccgtttcttcttacttatatacgata
gtaaagagactttccttaaacaggcttaagcagattgccagctcaaaatctgcggctgaa
catcatttcgtcaatttgaaagtgactgttaataccacagaagatgcattgtctttgagc
gagcttaaaagaatcactgcggaagcattagctttaatgccagaaaaacagcagcaggtc
tacagaatgagtagaaatgaggggctttcgcttgatgaaattgctttttctttaggtatt
cttaaaaatactgtcaaaaaacatctttctgaggctttaaaaatgataagaattcatttt
gcttcccgttattaccttcttgtagtttcattggtttcaattatcaataaataa
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