Pedobacter cryoconitis: AY601_1304
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Entry
AY601_1304 CDS
T04341
Name
(GenBank) Putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AY601_1304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcm03019
]
AY601_1304
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_1304
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AY601_1304
Messenger RNA biogenesis [BR:
pcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AY601_1304
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AY601_1304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
HTH_10
GTP1_OBG
Motif
Other DBs
NCBI-ProteinID:
AMP98224
UniProt:
A0A127VA87
LinkDB
All DBs
Position
1507669..1509858
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQTFFGFDNFKGDQESIITNVLERKNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKSEIAQVKSDLLSGQTKLLYVAP
ESLSKPDNIEFLKLITISFVAVDEAHCISEWGHDFRPEYRRIRQVISGLGPDIPIIALTA
TATPKVQQDIIKNLQMADATLFKSSFNRPNLFYEIRPKRDVIKEIIRYIKYNTGKSGIIY
CLSRKKVEEVAEALNLNGIKALPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDK
PDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMKDKPVAEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKTYFEAEEHLKVALT
LIKNIGEKFDDAHILCVLLGMETAQTIAYEHSKLQEFGLGKVEGENLWKSLIRQAVLNNF
LSKDIDNYGLLRLTNSGNDFIKNPYSLKFILNVPIESSADDDEDDVKHGSGTLDTQLLQL
LKDLRKKIAKQKNVPPFVVFQDPSLEEMCTHYPIAMDELKQISGVGNGKAMKFGTPFLEL
IKKYVTDNDIERPIDLIIKTQANKSQLKVSIIQNVDRQIGLEDIAKSKGITYSEILKEIE
AIVNSGTKLNLNYFVDEMLDDDRQDEVFDYFRAAENDSIDEALKDLGETDYTREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaaaagtcgttgtttgacaacttacaaaccttttttggtttcgacaatttt
aagggggatcaggaatcaattattaccaatgttcttgagcggaaaaatacctttgtaatt
atgccaacgggtggggggaaatctatctgttaccaattaccagctttaatgtcagaaggt
actgccatcgtgatatcgccgcttattgcgctgatgaaaaatcaggtggatcagttgagg
gcttttggtggaagtgacagtattgcacactttctgaattcttctttaaataaatcggaa
atagcccaggtaaaaagcgatttgttaagtggtcagactaaattattatacgtagccccg
gaatcattatccaagccggataatatcgaatttctgaagcttattacgatctcttttgtt
gcggttgatgaagcccattgtatttcagaatggggacatgattttcgtccggagtaccgg
aggatccgccaggtgatcagcggcctgggaccagacatcccgattattgcattaactgca
acggcaacaccgaaggtgcagcaggatattattaagaacttgcagatggccgacgctacc
ttgtttaagtcctcgtttaacagacccaacttattttatgaaatacgccctaaaagggat
gtaatcaaagaaatcatcaggtacattaaatacaatacaggtaaatccggtattatttac
tgcctgagcagaaaaaaggtggaagaagttgctgaagcattaaacctgaatggcatcaag
gcattgccttaccatgccggattagaacctaaagtcagagccgatacgcaagacaaattc
ctgatggaagatgtggaggttattgtggctaccatcgctttcgggatgggaattgacaaa
cctgatgttcgtttcgtaattcaccatgatattcctaaaagtatggaaggttattaccag
gaaactggaagagccggacgtgatggcggagaaggtgtttgtattgcattttacgcacag
aaagatgtagacaagctggctaaattcatgaaagataagccggtggctgagcgtgaaatt
ggtacacaaatcttaaaagaggttattgactacgcggaatcaggtgtgtgccgcagaaag
cagatcctgcattatttcggagaaaacttcaacgagacaggctgtaactgtatgtgtgat
aactgtaaaaaacctaaaacgtattttgaagccgaagagcacttaaaggttgcactgacg
ctgattaaaaatatcggggagaagtttgacgatgcacatatcctttgtgttttattagga
atggagaccgcgcagactatcgcttatgagcatagtaaactgcaggagtttggactgggt
aaagtagaaggtgaaaatctttggaaatctttaatcagacaggccgtattgaataacttt
ttatcaaaagatattgataactatggtttattaagactgaccaattcgggaaatgacttc
atcaaaaacccatacagtcttaaattcattctgaatgtacctatcgaaagttcggcagat
gacgatgaagatgatgtaaaacatggtagtggaacgctggatacgcaattgcttcaattg
ctgaaagatctgagaaaaaagatcgcgaaacagaaaaatgttcctcctttcgtcgttttc
caggacccttcactcgaagaaatgtgtacgcattatccgattgctatggatgaactgaaa
cagatttcgggtgtcggaaatggcaaggctatgaagtttggtacgcctttccttgaactg
atcaaaaaatatgtgacagacaatgacattgagcgtcctatagatttaattattaaaaca
caggcaaataaatcacaattaaaggtttccattatacaaaatgtagacagacagattgga
ctggaagatattgccaaatctaaagggatcacttatagtgaaatcctgaaagaaatagaa
gcgattgtgaactccggaactaagctgaacctgaactactttgtagatgaaatgctggat
gacgatcgccaggacgaagtatttgattacttccgtgcggctgagaatgattcaattgat
gaagctttgaaagatttgggtgaaacggattatacgcgtgaagagatacaattaatgaga
atcaagttcatgtcagaacttggaaattaa
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