Pedobacter cryoconitis: AY601_1322
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Entry
AY601_1322 CDS
T04341
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcm
Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcm03032
]
AY601_1322
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_1322
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AY601_1322
DNA replication proteins [BR:
pcm03032
]
Prokaryotic type
DNA Topoisomerases
AY601_1322
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AY601_1322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
NtrZ
Motif
Other DBs
NCBI-ProteinID:
AMP98242
UniProt:
A0A127VA18
LinkDB
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Position
complement(1531397..1533994)
Genome browser
AA seq
865 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFIVKSSYGHIRDLIKGDMGIDTNNDFAQTYEVPADK
KQVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKENKTKRIVFHEITKPAILK
AIESPRTIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVNKFNAAAAYKITARFSTGKAREFVKAELPQRFEQEAEAEKFVRDCVNAGFKISSLETK
PAKRNPAAPFTTSTLQQEASRKLGFPVSRTMQVAQRLYESGKITYMRTDSVNLSETALTA
AANEINSAYGQKYHQLRTYKTKSAGAQEAHEAIRPTYFDQHTVTGDSSEQRLYELIWKRA
IASQMSEALFEKTTAQIAVSTRSESLVAEGEVMKFDGFLKVYLESSDDEDAEDKDNENIL
PPLAKGQELSLNVMNATERFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRSRSFGSIILENGEVTKAIKTEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQNWTKMLHAFYTPFHKEVEVTTETADRANGERLLGVDPVSGK
NVYAKVGKFGPLVQIGQNDDEEKPKYASLMKSQSVGTVTLEDALEQFRLPFQLENYKDKE
VAVGVGRFGPYVKWGETYISIPKNEDPLTVDQSRAIAIIEEKITADAPVAHYEGLPVTKG
TGRFGPFIKWNDLFINVPKAYNFDELSDSDIKELIGKKVEKEANRFIQQWTADKIAIENG
RWGPFIRFGKDMLKLGKNPATNEKYTPEELAVLSLEEVKKLIVEQVPNAFEPKATKKKAA
GTKVAATKSAAAKAPAKKKAPVKKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatagttgaatcacctgcaaaagcgaaaacaatagaagggtat
ttgggtaaagattttattgttaaatcgagctacggacacatccgcgatttaattaaagga
gatatgggaattgatacgaacaatgatttcgcccaaacctatgaagtacccgccgataaa
aagcaagtggtagctgaacttaagaaattagcaaaggaagccgagatggtatggctcgca
tccgatgaggaccgcgaaggggaagcgatttcctggcacctgtttgagacgctgggattg
aaagaaaacaagaccaaacgtattgttttccacgaaatcaccaagcctgcaattttaaaa
gcgattgaatctccaagaacaattgattataacctggttaatgcacaacaagcaagacgc
gtgttagaccgcctggtaggtttcgaactttctcccgttttatggaaaaaagtgaaacct
tctttatcggccggccgtgtacaatcagtagcagtacgtcttattgtagacagagaacgt
gaagtaaataagtttaacgcggccgctgcctataaaattacagcgcggttcagcacagga
aaagcaagggaatttgtgaaagcagaattacctcagcgatttgaacaggaagccgaagca
gagaaatttgtccgcgactgtgtcaatgccggttttaaaatcagcagcctggaaactaaa
ccagctaaacgtaatcctgcagcaccttttacgacctctacactgcaacaagaagcttcc
cggaaactgggcttcccggtatcacgtaccatgcaggttgcacaacgtttatatgaaagt
ggaaagatcacttacatgagaacggattcggtaaacttatctgaaacagctttaacagct
gcagcaaatgaaatcaattctgcctatggacagaagtatcatcagttgagaacttataaa
actaaatccgcgggggctcaggaagcgcatgaggccatccgccctacttactttgatcag
cataccgtaactggtgatagttctgaacaacgcctgtatgagctgatttggaaacgtgcc
attgcttctcaaatgagtgaagccttgtttgaaaaaacaactgcacaaattgcagtgagt
acacgcagtgaaagcctggttgctgaaggtgaagtcatgaaatttgatggtttcctgaaa
gtttacctggaatccagtgatgatgaagacgcagaagacaaagacaacgaaaatatcctt
cctcctttagctaaaggtcaggagctgtcactgaatgtgatgaatgcaaccgaacgtttc
tcccgtccgcctgcaagatatacagaggcaagcctggttaagaaactggaagagcttggt
attggccgtccttctacttatgcaccaaccatttctacgatccagaatcgtggttatgta
gtgaaagaagatcgtgatggtcgcagccgttcatttggttcgattattcttgaaaatggc
gaagtcaccaaagccattaaaactgaaattaccggtgcggaaaaatctaaattattccca
actgatataggtgaagttgtcaatgactttttagtagaacattttaaaggtatagttgat
tttaactttacggctaaagtagaaaaggaatttgatgagattgcccagggcttacagaac
tggacaaaaatgctccatgctttttatacgccttttcataaggaagttgaagtgactact
gaaactgccgacagagcaaatggtgagcgcttattgggtgttgatcctgtgagtggtaaa
aatgtttacgcaaaggttggtaaattcggccctctggtacaaatcggtcagaatgatgac
gaagagaaaccaaagtatgcaagtctgatgaaatcgcagtcagtgggtacggtgactctt
gaagacgctttagagcagttcaggttacctttccaattggaaaactataaagataaagag
gttgctgtaggcgttggccgttttggaccttatgtgaaatggggcgaaacatatatctct
attcctaagaatgaagatccgttaactgttgatcagagccgcgcaattgcaattattgaa
gagaaaattactgctgatgcacctgttgcacattatgaaggattgcctgtgactaaaggt
accggacgtttcgggccgtttatcaaatggaatgatttatttatcaacgtacctaaagct
tataactttgatgaattatctgatagtgatatcaaggaactgattggtaaaaaagtagag
aaagaagccaacagatttattcaacaatggactgctgataaaattgcgatcgaaaacggc
agatggggacctttcatccgttttggaaaagacatgctcaaactgggtaagaacccagcc
actaacgaaaagtatacacctgaagaactggctgtactttctctggaagaggttaaaaaa
ctgattgtggagcaagttccgaatgcttttgaaccaaaagcaacgaaaaagaaagcagct
ggtactaaagttgctgctacaaaaagtgcagcagcaaaagcacctgcaaagaaaaaagcc
ccagttaaaaagaaataa
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