Pedobacter cryoconitis: AY601_1508
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Entry
AY601_1508 CDS
T04341
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03030
DNA replication
pcm03430
Mismatch repair
pcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AY601_1508
03430 Mismatch repair
AY601_1508
03440 Homologous recombination
AY601_1508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcm03032
]
AY601_1508
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_1508
Enzymes [BR:
pcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AY601_1508
DNA replication proteins [BR:
pcm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AY601_1508
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AY601_1508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
7TM_GPCR_Sri
Motif
Other DBs
NCBI-ProteinID:
AMP98425
UniProt:
A0A127VAV5
LinkDB
All DBs
Position
1741887..1744829
Genome browser
AA seq
980 aa
AA seq
DB search
MYLNVHSHYSLRYGTIAVPKLIEAAAAKGITQMVLTDLNNSTGVMEFWRACNAAGIKPIG
GLEFRRNKKLLYIGIARNKEGMKELNDFLTFHNLKQQELPDQPPVFKNCFIIYPYVYGKI
LRENEFMGIRFDELHQLYEKEIKDFAAKLVILQPVVFLDKIGYRLHEYLRSVDLNTLLTK
TSTADKCSPSDTFLPPGELETRFSKYPFILENTRQLLDGCVMDYEQGKQKLNRKTFTGSM
SRDKELLEELAMKGLAERYGEGHEKALEKVKYELKIIHDLNFCAYFLITWDIIQYSVSQG
YYHVGRGSGANSTVAYCLRITDVDPLELDLYFDRFLNAQRTSPPDFDIDYSWDERENVQQ
YIFEKYGAAHTALLGTMSTFKDRSVIREIGKVMGLPKAEIDSFTDRTQDLANQGNPTFKK
IMAVAELMNSMPNQRSIHAGGVLISEEPITYYTALDLPPKGMATVQWDMYEAELIGYDKY
DILSQRGIGHIKEAVRLVEQNLGLKIDVHQVKKFMKDPALNARLQSGNTIGCFYIESPAM
RQLLAKLKCDNYLTLVAASSIIRPGVAQSGMMKTYIQNHHQPETVNYLHPVMKEQMQETY
GVMVYQEDVIKVCIHYAGMNSSDADILRRGMSGKYRSRMEFDKLIDKFFAGASKLGREEV
TTKEVWRQVSSFAGYSFSKAHSASFAVESYQSLFLKTYYPIEFMVAVLNNYGGFYSRWLY
VHELRKAGARVHLPCVNKSTPVVSLSGADAYLGFIGILGLTLKLMEQIPEERHRNGDYLD
LTDFVKRTAISLDQAIILIRTGALRFTGRSKKELLWDVHSLLGSKVKVQNHAQLFEAEHK
HYQLPEFVNTTLEDAYHELELLGFPLSLSSFDLLQTDYRGHPQTNDLFSYVGQIVKMVGL
YVCEKTVHTKNNKKMWFGTFLDAEGNFFDTTHFSSSTPSYPFRGAGCYLILGKVVEDFGY
PSVEVIKFAKLPIVGNPVLE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgtacttgaatgtccactctcattatagcctccgttatggcacaatcgcggtccctaaa
ctgatcgaagcagccgcggctaaagggattactcaaatggtactgaccgatctgaacaat
tctaccggggtaatggaattttggagggcttgtaatgcagctggaattaaaccaattggc
ggattagaattccgcaggaataaaaaattgctgtacatcggtattgccagaaataaggaa
ggtatgaaggaattgaacgatttcctgacctttcataacctcaagcagcaagaattgccg
gatcagcctcctgtatttaaaaactgttttatcatttacccttatgtgtatgggaaaata
ctcagagaaaatgagtttatggggattcgttttgatgaattacaccagctttatgaaaaa
gagatcaaggatttcgcggctaaacttgtcattttacaaccggtcgtttttctggataaa
ataggataccgtttacatgaatatttgcggagtgttgacctgaatacacttttaactaaa
acaagcacggccgataaatgcagtccttcggatactttcctgccgcctggagaattggaa
acccgctttagcaagtatccttttatcctggaaaatacccggcagttgctggatggttgt
gtgatggattatgagcagggtaagcagaaacttaaccggaaaacctttaccggaagtatg
tccagagacaaagaattgctcgaagaactggctatgaaaggtttagcagaacgttatgga
gaaggccatgaaaaagcattggagaaggtgaaatatgaacttaaaatcattcatgacctg
aatttttgcgcttattttctcatcacctgggacattattcagtactcggtaagccagggt
tattatcatgtggggcgtggttcaggggcaaatagtacagtagcttactgtttgagaatc
actgatgttgaccctttggagctggacctttactttgatcggtttctcaatgcgcagcga
acttctccccccgattttgatatcgattattcgtgggatgaaagggaaaatgtacagcag
tatatttttgagaagtatggtgcagcacatacggctttattaggtacgatgtctactttc
aaagatcgttctgtgatccgggaaattggtaaggtcatgggtttgcccaaggcagagatt
gatagctttacagaccgtactcaggatctggctaatcagggtaatcctacctttaaaaaa
atcatggctgttgcagaattgatgaacagtatgcctaaccagcgcagtattcatgctggt
ggagtcttgatttctgaagaacccatcacttattatacagcgctggacctgcctcctaaa
ggaatggctaccgtacaatgggatatgtacgaagcagaactgattggttatgacaaatat
gatattttaagtcagcgcggtattggtcacattaaagaagccgtaagactggtggagcag
aatctgggtttgaaaatagatgtgcaccaggttaagaagttcatgaaagacccggcgctg
aatgccagactgcaatccgggaatacaattggttgtttttatattgaatcaccagcaatg
cgtcagctgctggccaaactcaaatgcgacaattaccttacactggttgctgcaagttct
atcatccggcctggtgtggcacaatcgggtatgatgaagacttacattcagaatcaccat
caaccagaaaccgtgaactacctgcacccggtcatgaaagaacagatgcaggaaacctat
ggggtgatggtgtatcaggaagacgtgattaaagtctgtatccactatgccgggatgaat
agcagtgatgccgatatattacgcagaggaatgagcggaaaataccgttcccgtatggag
tttgataagttaattgataaattctttgcaggtgccagtaaactgggacgtgaagaagta
accactaaagaagtgtggcgacaagtttcttcatttgcaggttatagcttctctaaagca
cattctgcaagttttgcagtagaaagttaccagagcctgtttctgaaaacttattatccg
atagagtttatggtggctgtactgaataattacggcggtttttattcccgctggttatat
gtacacgaactgcgtaaggctggtgcacgcgtacatctgccttgcgtgaataagagtact
ccggtagtctccttaagtggagctgatgcctacctgggctttattgggatactgggactg
acgttaaaattgatggaacagattcctgaagaacggcacagaaatggagattaccttgat
ttaactgattttgtaaaacgtacagcaattagcctggatcaggcaattatactgattcgt
accggagctttacgtttcaccgggcgcagcaaaaaggaattgctttgggatgtacattct
ttacttggctctaaagtgaaagtgcagaatcatgcacagttatttgaagcagaacacaaa
cattatcagctgcccgaattcgtgaatacaacattggaagatgcgtaccacgagcttgaa
ttacttggttttccacttagtctttcttcttttgatttgctgcaaactgattaccgcgga
catccgcagaccaatgacctgtttagttatgtggggcagattgttaaaatggttggtctt
tatgtttgtgaaaagacggtgcataccaagaacaataaaaagatgtggtttggtactttc
ctggatgcagaaggcaatttctttgataccactcatttttcaagcagtactccatcttat
ccgtttcgtggagcaggttgttacctgattttaggtaaagtagtggaagactttggttat
ccgagtgtagaagtgatcaaatttgccaagttaccgattgtcggtaatcctgtattggaa
taa
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