Pedobacter cryoconitis: AY601_1689
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Entry
AY601_1689 CDS
T04341
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AY601_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcm03019
]
AY601_1689
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_1689
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AY601_1689
Messenger RNA biogenesis [BR:
pcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AY601_1689
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AY601_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_Crp_2
TFIIE_alpha
HTH_24
HTH_36
MarR
HTH_5
HTH_41
Cas3-like_C_2
Fe_dep_repress
DUF1003
Motif
Other DBs
NCBI-ProteinID:
AMP98604
UniProt:
A0A127VBC4
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Position
complement(1953462..1955354)
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AA seq
630 aa
AA seq
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MNETEVLKQYWGFNSFRPLQQDIIQAVLEGKDVMALLPTGGGKSLCFQVPALVKEGICIV
VSPLIALMKDQVENLKAKGINAVAIYAGMGKREIDILLDNCIYGPVKFLYLSPERLLSDL
VRTRISYMNVNLIAIDEAHCISQWGYDFRPSYMQITALREIHPEVPFIALTATATAFVRE
DIVDKLALRDPHIFVQSFARKNLSYVVFGLEDKHKKLIDIVTNVKGSGLVYVRNRRETSE
IALFLNRNQIAADFYHAGIEKDERSKKQEAWKQNKIRVMVATNAFGMGIDKPDVRFVVHL
DLPESLEAYYQEAGRGGRDGKRAYAVLLANAADQLALKAKYTDSFPSVEEIKKTYHYLGT
YFQLAYGAGAGINFSFDLADFCKRFKLGVIKTMGALKFLEHDGYITLSENIFLPSRVLFT
AGNEDVYRFQIENSGYDPLIKTILRSYGGMFDHYANISESDIAAKLKISFNSVVRQLSNL
QEQGLISYLPQTDQPQMQFVVARVDLLHLDTDVKYIELRKKIQSEQIRAVLAYADTFVCR
SIQLLSYFDEPNADQCGVCDVCLAQKRNEDLAELEDKIDFEIATLVQTEPQTLDALINQI
RTGTDQDKLNRIRELLDAGKIKTDGKNYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaacagaagtattaaaacaatattggggatttaattcattcagacccttacag
caggatatcatccaggccgtattggaggggaaggatgtgatggcacttttaccaacggga
ggtgggaaatctttatgcttccaggttcctgcactggtcaaagagggaatttgtatcgtg
gtttctccgcttatcgctttgatgaaagatcaagtagagaatttaaaagcaaaagggatc
aatgccgtagctatttacgctggaatgggtaaaagagaaatagatattttgcttgataac
tgtatttacggccctgttaaatttctttacttgtcaccggaacgtttattgtccgatttg
gtgagaaccaggatttcttatatgaatgttaacctgattgcgatagatgaagcgcattgt
atttcgcaatggggttatgatttcaggccatcttatatgcaaatcaccgcattgagagaa
atccatccggaagtcccttttatcgcattaacggcaactgctacagcttttgtaagggaa
gatatcgtagataagctggccctgagagatccgcatatttttgtgcagagctttgcccgt
aaaaacctgagttatgtggtttttggcctggaagataagcacaaaaaactgattgatatt
gtgacaaacgtaaaaggtagtgggcttgtttatgtccgtaacagacgtgaaacttcagaa
attgctctttttttaaatagaaatcagattgctgctgatttttatcatgcaggaatagaa
aaagatgaacgttccaaaaaacaggaggcgtggaagcagaataagatcagggttatggtc
gcgaccaatgcttttgggatggggatagataaacctgatgttcgttttgtagttcatctg
gatctccctgaaagtctggaggcttattatcaggaagctggacgtgggggcagagatggg
aaaagggcttatgctgttttgttggctaatgcagctgatcaattggcattgaaagcgaaa
tacacggatagttttccatctgtagaagaaatcaagaagacctatcattatttaggaacc
tattttcaacttgcttatggagcaggagcgggcattaactttagttttgatctggctgat
ttctgtaagcgttttaagctgggtgtaatcaaaactatgggtgctttaaagtttttggaa
catgatggttatattaccctttcggaaaacatattcctgccttcccgtgtattatttact
gcgggcaatgaagatgtttatcgttttcaaattgagaattcgggctacgatccactgatt
aaaacgatattaagatcttatggcggaatgtttgaccattatgctaatattagtgaaagc
gatatagcagcaaaattgaagatttcttttaacagtgtggtgcggcagctcagtaatttg
caggagcagggcttgatttcttatcttccgcaaacagatcagcctcaaatgcagtttgta
gtcgcgagagtagatttgctgcacttggatacggatgtgaaatatatagaattgagaaaa
aagatccagtctgaacagatccgtgctgtattggcttatgcggatacatttgtttgcaga
agtatccagttattatcttattttgatgagccgaatgctgatcagtgcggggtatgcgat
gtttgtttagcgcagaaaaggaatgaagaccttgcagaactggaggataagatagatttt
gaaattgcaacgctggttcaaacggagccccaaacacttgatgcgctgattaatcagatc
agaacgggtaccgatcaggacaagctaaaccgcattcgcgagctattggatgcaggtaaa
attaaaacagacggcaaaaactattacctttga
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