Pedobacter cryoconitis: AY601_2463
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Entry
AY601_2463 CDS
T04341
Name
(GenBank) Nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pcm
Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_2463
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AY601_2463
Archaeal homologous recombinant proteins
AY601_2463
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
AMP99353
UniProt:
A0A127VDD1
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All DBs
Position
complement(2930407..2931633)
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AA seq
408 aa
AA seq
DB search
MRILHTADWHLGKRLEQSERTEEHQAFLDWLIQTLQTEKIDVLIVAGDVFDTGSPSNTAF
EQYYGFLRRVKDTNCREVIIIGGNHDSISTLNAPSTLLKYFNVHIIGGVPEDFTDQIIEI
HNPSGELELVVCAVPFLRDRDIRLSVSGETAEERETRIKQGICDHYHRFKEYIGEYKANH
IPVIATGHLFAAGSSTSDSEKEIHVGNLGQVGGDQFPVEFDYVALGHIHRPQVINEMNHI
RYSGSPIPLSFSETDDRKQVIVLEFEAGELVSLVEVEVPGYRKLIRIKGDFEKVKTKLVL
LEDPGTLYPAWVEVQVETAAFIFDLEEQLNTLIVNKPFIERLFPRQLRTRAVLNLDEQTH
EAMALTDLDPQTVFLKRCEAEYPEQDHADLLLTFKEVLEYMAQKEDKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagaattcttcatacggccgactggcacctgggaaaaagactggaacaaagtgaacgt
acagaggagcatcaggcttttctggactggctgatacagactttacagaccgaaaaaata
gatgttttaatcgttgctggtgatgtttttgataccggtagcccctctaatacagctttt
gagcagtattatggttttttgagaagggtaaaggatacgaactgcagagaagtaatcatt
attgggggcaaccatgattctatcagtaccctaaacgccccctctacactgcttaagtac
tttaatgtacacattattggcggggtccctgaagattttacagatcagattatagaaata
cacaatccttcgggtgaactggaactggtagtttgtgccgtcccttttctgcgtgaccgc
gatatcagactttctgtttctggcgaaactgctgaagaaagagaaacccggattaaacag
gggatttgtgatcactatcatcgtttcaaagaatatatcggggaatataaggctaatcac
attccggtcattgctacaggacatctttttgctgcagggtcgagtacttcggatagtgaa
aaagagatccatgtaggtaatttggggcaggttggtggagatcagttcccggtagagttt
gattatgtggcattggggcatatccatcgcccgcaggtaatcaatgaaatgaatcatatc
cggtattcaggttcgccaattccattgagtttttctgaaactgacgatagaaaacaggtt
attgttcttgaatttgaagcaggggagttggttagcctggtagaagttgaagtgcctggt
taccgcaagctgatcaggattaaaggggactttgaaaaggtgaagactaaattggtttta
ctggaagatcctggcacattatatccggcatgggtagaggttcaggtggaaacagcagcc
ttcatttttgatttagaggaacagttgaatacgctgatcgtgaataagccatttatagaa
cggttatttccccggcagctcagaacaagagcagtcctgaatctggatgaacaaacgcat
gaggctatggcattgacggatcttgatccgcagaccgtgtttttaaaacgttgtgaggca
gaatatccggaacaggaccatgcggacctgctgcttactttcaaagaggttttagaatat
atggcacaaaaggaggataagggatga
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