Pedobacter cryoconitis: AY601_2481
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Entry
AY601_2481 CDS
T04341
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AY601_2481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_2481
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AY601_2481
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
HTH_24
HTH_11
GerE
UPF0122
YqxI
HTH_AsnC-type
RtcR_C
DUF722
HTH_23
HTH_Tnp_ISL3
HTH_40
HTH_10
HTH_Mga
Phage_antitermQ
HTH_38
OGG_N
FapA
LepB_N
YkyA
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
AMP99371
UniProt:
A0A127VDS7
LinkDB
All DBs
Position
complement(2955608..2956192)
Genome browser
AA seq
194 aa
AA seq
DB search
MGMYSEYSDSELIELLKSGDRFAFTEIYNRYWSVLYAQVYKMLRDEDEAKDVIQEIFSKL
WINASAIKSNHNLGGLLYTAARNKVLNSIEKSRVRHDYAKSIAAFVSETDPDTIDKLDEK
RLSKIIEREIQSLPPKMREIFELSRKENLSHKEIAEKLNLSDQTVKKQVQNALKIIRPRI
EQIGFSLAILIILR
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgtatagtgagtattcagatagtgaactgattgaattattgaaatctggtgac
cgctttgcatttactgaaatctataatcggtattggagtgttctctacgcacaagtctat
aaaatgctcagggatgaagatgaggctaaagatgtcattcaggaaatattcagtaaacta
tggatcaacgcttcagcgattaaatccaatcataatttgggtggcctgctatacactgct
gcaagaaataaagtcctgaatagtattgaaaaaagcagagtccgccatgactatgccaaa
tctattgctgctttcgtctcagaaacagatcctgataccattgataaactggatgaaaag
cggctcagtaaaattattgagcgtgaaattcagagcctgccgccaaaaatgcgggagata
tttgaattgagccgtaaagagaacctttctcacaaggagattgctgaaaagctgaatcta
tcagatcagaccgtcaaaaaacaagtacagaatgcactgaaaattatcaggccaagaatt
gaacaaataggttttagccttgccattttaattattttaagataa
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