KEGG   Pedobacter cryoconitis: AY601_2783
Entry
AY601_2783        CDS       T04341                                 
Name
(GenBank) hypothetical protein
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm  Pedobacter cryoconitis
Pathway
pcm02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pcm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AY601_2783
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcm03021]
    AY601_2783
Transcription machinery [BR:pcm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AY601_2783
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_ECF GerE Sigma70_r2 HTH_40 Sigma70_r4 HTH_24 HTH_5 HTH_10 HTH_11 HTH_23 PF0610-like_N UPF0122 HTH_Tnp_ISL3 HTH_20 HTH_AsnC-type PCI DUF2774 Get5_C HTH_69 HTH_25 HTH_28
Other DBs
NCBI-ProteinID: AMP99666
UniProt: A0A127VE84
LinkDB
Position
complement(3309309..3309845)
AA seq 178 aa
MEILRVNMGDKLLNQIDDASFRALFDLYWKPLVAFCQHHIKDDEIAMDIVQDIFHSLWRR
RDGLQIETRMEYYLFRAARIKVSDYYREKFKRENQNHCLSENFCERINNTEETILFRDLD
HFVDGLVNRLPCRCKQVYTLSRNSGLSIPEIAEQLEISEKTVEAHLTKALRFLKTYLH
NT seq 537 nt   +upstreamnt  +downstreamnt
gtggaaattctaagggttaatatgggtgataaattgctgaatcagatcgacgatgcaagt
tttcgtgccttgttcgatctgtattggaagccactggttgctttttgtcaacaccatatc
aaggatgatgagattgctatggacatcgtccaggatatctttcattctctctggagacgc
agagacggtcttcagatcgaaacacgtatggaatattatttgttccgtgcggcccgtatt
aaagttagtgactattaccgtgaaaaatttaaacgagagaatcagaaccattgcctttca
gaaaatttctgtgaaaggattaacaatacagaggaaaccattctcttcagagatctggat
catttcgttgatggactagttaacagactgccctgcaggtgcaaacaagtatatacttta
tcccggaatagtggcctgagtatacctgaaattgctgaacagcttgagatttctgaaaaa
actgtagaagcacatttaaccaaagcgttacgctttcttaagacttatttgcattaa

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