Pedobacter cryoconitis: AY601_3053
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Entry
AY601_3053 CDS
T04341
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03420
Nucleotide excision repair
pcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AY601_3053
03430 Mismatch repair
AY601_3053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_3053
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AY601_3053
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AY601_3053
MMR (mismatch excision repair)
Other MMR factors
AY601_3053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_12
ResIII
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
AMP99926
UniProt:
A0A127VF15
LinkDB
All DBs
Position
3665527..3667833
Genome browser
AA seq
768 aa
AA seq
DB search
MDYLAGLNPQQRAAVENTKGPAMIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTN
KASKDMRERISKVVGTEAKNLWMGTFHSVFAKILRVEAEKIGYPSNFTIYDTDDSKSLIR
SILREMQLDDKLYNANFVYNRISSAKNNLVSHVEYMKNAEIQAEDISNKRPLIGSIYETY
TKRCFKAGAMDFDDLLFKTNVLLKDHPDVLNKYQQKFKYLMVDEYQDTNFSQYTIVKKLA
AAYQNICVVGDDAQSIYGFRGANIQNILNFEKDYPDLKVYKLEQNYRSTQNIVDVANSII
ANNKNQLEKNVFSENEAGDRIKVSRAFTDNEEGKIVAEAIVQDRTSKGLNYSDFAILYRT
NAQSRAMEEGLRKLNIPYKIFGGLSFYQRKEIKDLIAYFRLTFNPSDEEAIKRVINYPKR
GLGDTTVDKIIVAADQHNITMWQVVCEPQTYIAGRIANQLNDFSVLIQSFQAEAKKLDAY
ETALYIAQHSGILKELHTDDSVEGRSRYENIQELLNGIKEFAEREDIEDRSLAIFMQDIA
LLTNDDRQDDKEKDTVSMMTIHSAKGLEFKNVFVVGLEENLFPSQMSLNSRTDLEEERRL
FYVAITRAEKKLTLTYATSRYRWGTLTNCEPSRFISEISAKFLELEVVKAPKTSLSSDSF
DGERRSWTQQRDSFSKPKPASSGSATQTAPIRPKTSTMLPTAHIPTPGFAPDAASAFQNG
MEVEHEKFGFGKIINLEGTLPDVKATVFFQGLGNKQLLLKFAKLRIVK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcaggattaaaccctcagcaacgtgcagcagtagagaatactaaagga
ccggcaatgattgtcgctggtgcgggatcaggtaaaacaagggtaataacatatagagta
gcacatcttattgaaaaaggtgtggatgcttttaatattttagtattgacctttacgaac
aaagcttcaaaagatatgcgtgaacgtatctcaaaagttgtgggtacagaggcaaaaaac
ttatggatgggaacattccactctgtttttgccaaaatattacgtgttgaagcagaaaag
ataggttatccctctaactttactatttatgataccgacgatagtaaaagtctgatcaga
tctattttgcgggaaatgcaattagatgataagttatacaatgcaaatttcgtctataac
cggatatcttctgcaaaaaacaacctggtcagtcatgtagaatacatgaaaaatgctgaa
attcaggcagaggatattagcaataaacgtcctttaatcggttctatctatgaaacttat
accaaacgctgctttaaagcaggcgcaatggattttgatgatttacttttcaaaaccaat
gtcttgttgaaagatcacccggatgtactgaataaataccagcagaaatttaaatacctg
atggtggatgagtaccaggatactaacttttcacaatatacaattgtaaaaaaactggca
gcagcttatcagaatatctgtgtggtaggtgatgatgcgcaaagtatttacggtttccgt
ggggcaaacatccagaatatcctgaattttgagaaggattatcctgacttaaaagtctat
aaattagaacagaactaccgctctacccaaaatatcgttgacgttgccaatagcatcatt
gcaaacaacaaaaatcagctggagaaaaacgtattttctgaaaatgaagctggtgacaga
attaaagtatcaagagcgtttactgacaatgaggaaggtaaaatagttgcagaagctatt
gttcaggacagaacttcaaaaggattaaattatagtgattttgctattctttaccgaacc
aatgcccagtcaagagcaatggaggaaggtttaagaaaactcaatataccttataagatc
tttggagggttatctttctatcagcgtaaagagattaaagatttaattgcttacttccgt
cttactttcaatccaagtgatgaagaagcaatcaaaagggttatcaattatccaaaaaga
ggattaggtgatactacggttgataaaattatagtcgctgctgaccagcataacatcacg
atgtggcaggtagtctgtgaaccgcaaacctatattgcaggccggattgctaaccagttg
aatgatttctctgtattgatccagagtttccaggcagaagccaaaaagctggatgcctat
gaaactgctttatatatcgcacagcattctggtatcctgaaagaactgcataccgatgac
agtgtagaaggccgcagcaggtatgaaaacatacaggaattattgaatggtattaaagaa
tttgccgagcgtgaagatattgaagacagaagccttgctattttcatgcaggatattgca
ctgttaacgaacgatgaccgtcaggacgataaagagaaagataccgtttcaatgatgacg
atccactctgcaaaaggactggaattcaagaatgtttttgtagtaggattggaagagaac
ctgtttccttcgcaaatgtcattgaattcaagaactgatctggaagaagagcgccgttta
ttttatgtcgccattacccgtgcagaaaaaaagctgaccctaacttatgcaacttcccgg
taccgatggggaacactgaccaattgtgaaccgagtcgttttatcagtgaaatcagtgca
aaatttctcgaactggaagtggttaaagcccctaaaacaagtctgtcatctgatagcttt
gacggggaacgcaggtcatggacacagcagagagattccttcagcaagcccaaaccagca
tcctcaggttcagctacccagactgctcctataagaccaaaaaccagtacgatgctgcct
actgcgcacatccctaccccaggttttgcacctgatgcagcaagtgcatttcagaatggt
atggaagttgagcatgagaagtttggatttggtaaaattatcaatctggaaggtacttta
ccagacgtaaaagcaaccgtatttttccagggattaggaaacaagcaattgttattaaaa
tttgctaaattgcggattgtaaaataa
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