Pedobacter cryoconitis: AY601_3265
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Entry
AY601_3265 CDS
T04341
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcm
Pedobacter cryoconitis
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcm03032
]
AY601_3265
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_3265
Enzymes [BR:
pcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AY601_3265
DNA replication proteins [BR:
pcm03032
]
Prokaryotic type
DNA Topoisomerases
AY601_3265
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AY601_3265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AMQ00136
UniProt:
A0A127VFM0
LinkDB
All DBs
Position
complement(3887377..3888426)
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AA seq
349 aa
AA seq
DB search
MVQTSEEIKEIGLVYVTDSMPGLYRKGKPGKFYYEDHNGQRVKDEAQLERIKALVLPPAW
TEVWIAAKKNAYLQATGMDVAKRKQYRYHTKWTSRRSDLKYYRLLEFGKALPQARKRIAK
DLKRPVYDEQKVLAICVQLMQKTLIRVGNEAYAQLYGSYGLSTLRNKHAKINGNVLQLKF
VGKKGVKQEVALNDKNLAKMVKNCMEIPGQDLFQYYTADSERRAIDSGMINNYIKEITGS
DFTAKDFRTWGGTLEALRQLAICTGNVEEERPKKKIVTEVMKCVASKLGNTPAVCKSSYV
YPLLIEAFEQDQLLKYMKKIHTTRPDTIQAMENDEKVLMKFLKAVQKKL
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggttcagacttcagaagaaattaaagaaattggtttggtatatgttactgacagtatg
cctggtctttaccgtaaaggaaaacccggaaaattttattacgaagaccacaacggtcag
cgggtaaaagatgaagcgcagctggaaagaattaaagcattggtattaccacctgcctgg
actgaggtctggattgcagcaaaaaagaatgcttatttgcaagcaaccggaatggatgtt
gcaaagcgcaaacaataccgttaccataccaaatggacttcccgaagatctgatcttaaa
tattaccggttactggagttcggaaaagctttaccacaagccaggaagaggatcgcgaaa
gacttgaaaaggcctgtgtacgacgaacagaaggttttggctatttgtgtacaactcatg
caaaagacactcattcgcgttggcaatgaggcttacgcgcagctttatggtagttatggc
ttgtctacgctcagaaataaacatgctaaaataaatgggaatgtactccagttaaaattt
gtaggtaaaaaaggggtaaagcaagaagttgcccttaacgataaaaacctcgccaaaatg
gtcaaaaactgtatggagattcccggacaagacttgtttcaatactataccgctgattca
gaacgcagggcgatagattcagggatgattaacaattatatcaaagaaattaccggaagt
gattttactgctaaagattttcgtacctggggcgggacattggaagctttaaggcagctg
gccatttgcactggtaatgtagaagaagaacggcctaagaaaaagattgtgaccgaagtc
atgaaatgtgtggccagtaaattaggcaatacacctgcggtctgcaaaagttcctatgta
tatccgctgctgattgaagcttttgaacaggatcaattgttaaagtatatgaagaaaata
cataccaccaggcccgatactatccaggcgatggaaaatgatgaaaaagtcttaatgaag
tttcttaaagcagtacaaaagaaattatag
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