Pedobacter cryoconitis: AY601_3277
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Entry
AY601_3277 CDS
T04341
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AY601_3277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_3277
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AY601_3277
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
Sigma70_r2
HTH_23
HTH_10
HTH_40
HTH_11
HTH_24
HTH_28
UPF0122
HTH_38
DUF2774
DUF722
Terminase_5
HTH_36
TnsD
PhyR_sigma-like
HTH_7
PF0610-like_N
HTH_20
HTH_Tnp_ISL3
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AMQ00148
UniProt:
A0A127VFZ7
LinkDB
All DBs
Position
complement(3902598..3903146)
Genome browser
AA seq
182 aa
AA seq
DB search
MLNYTQNIKEGDHISFEIVFKLWHKKVYAYFFKKTASGDQAKELTQMAFIKLWNFKHTLS
EEYPFDLQLFKIAKTTLLDYFRKLANEERNLKLFYHKATEEIVEQDQSFETKQQLDLVLN
VLPPTRKKVFMLNRLHGYSYKEIAEQLSISPRTVEKHISLAMKQLHGYSSIPALIFLIRF
FQ
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgttgaattatactcagaatataaaagagggtgaccatatatcttttgagatagttttt
aagctatggcataaaaaagtctacgcttatttttttaaaaagacagcttccggagatcag
gcgaaggagcttacccagatggccttcattaagctatggaactttaaacacaccctgtcc
gaagaatatccattcgatcttcagctgttcaaaattgcaaaaactactttactggattat
tttagaaaactggctaacgaggaacgcaatctgaagctattttaccataaagcaactgaa
gaaattgtggagcaagatcagagttttgaaactaaacaacaactggatctggttttaaac
gttctgccaccgacacgtaaaaaggtttttatgttaaacagactccatggctactcttat
aaggagattgctgaacagctctctatctcaccaagaacggtagaaaagcacatctctctg
gccatgaaacaacttcatggttattcttcaatccctgcacttattttcctgatcaggttt
tttcaatag
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integrated database retrieval system
