Pedobacter cryoconitis: AY601_3405
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Entry
AY601_3405 CDS
T04341
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03030
DNA replication
pcm03430
Mismatch repair
pcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AY601_3405
03430 Mismatch repair
AY601_3405
03440 Homologous recombination
AY601_3405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcm03032
]
AY601_3405
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_3405
Enzymes [BR:
pcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AY601_3405
DNA replication proteins [BR:
pcm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AY601_3405
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AY601_3405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AMQ00271
UniProt:
A0A127VGF7
LinkDB
All DBs
Position
complement(4051182..4055615)
Genome browser
AA seq
1477 aa
AA seq
DB search
MYLIFDTETTGLPANYNAPVSDTNNWPRCIQIAWQLHDALGNLVEHEDFLVRPDGFNIPY
DAERIHGISTELATEQGIDIREAVEKFNIALSKAKFVVGQNIGFDVNIMGAEFYRLGIES
PMAQMPVLDTCTEVTANLLKIPGGRGGRFKLPTLTELHSYLFGVPFAEAHNATADVEATT
RCFLQLVKMEVFTPEQLQADQEYIRSFIASQPAVIPSAGIQHINLKAASDEIRKRQAKAE
GPGLSKQDLKDNQQELKDATFVHLHNHTQFSVLQSTINIPGLIAAAAADKMPAVAMTDHA
NMMGAFHFVNQVLNHNKGVEARNNAAIEKGEEPAELPITPIVGCEFFVCENHLDKSRKDN
GYQMVLLAKNKTGYHNLAKMSSIAYTKGFYYIPRIDRNVIEQYKEDIIVLSGNLYGEIAS
KILNMGENQAEEALIWWKSLFGADFYMEIMRHNQDDETVVNKTLISLAQKHDIKLIATNN
TYYINKKDANAHDILLCVKDAEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKKLFADLPE
AILNIQEIVDKISIYKLAREVLLPKFDIPEQFLVQEDEDDAGKRGENKYLRHLTFVGAEK
RYGELTPEIIERLDFELQTIEKTGYPGYFLIVQDFIREARNLDVSVGPGRGSAAGSVVAY
CLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIIT
YGTMAAKSSIKDTARVLDLPLFEADKIAKLIPNLKLAKIFNLDEKSLRGALRADEYEKVV
ELKDIADSKSLSAETIQQARILEGSLRNTGIHACGVIITPDDITNYVPVAMAKDSDLYVT
QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVRLRTGIQLDPDEFPIDDVRTYELFQRG
ETIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDL
DACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVAQ
AAEKGHAPATLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLTNN
MSDIKQVAFFMEECKQMGVRVLGPDVNESILKFSVNPQGEVRFGLSGIKGVGEKAVESII
EERTNGGFYNSIYDFARRSNTRTVNKKAYESFVYSGAFDSFGFHRAQFFFVGINDKLNGI
EKLIKYSNDFQNSESSAQSSLFGGTVADMINEPTLPVAPEWTLIDRLKYEKDAIGIFLSG
HPLDNYKLELKEFCQHNVRHLSVVNKIRMGDTNEDVLAEFEQLKNRELVVGGLVVISAQR
MTKTGKPFGTIVFEDYNDSCELALFGEDFVKFKQFMTDGYFLQIRGRVGERFRKEGDWEF
KITSIALLSDLRDKLAKCITIQIPIQGINDQIITQILAMIEENKENTEQQNCQLNFVVYD
REQNVSLDLPSKSLKINPDNAFLEQLKALNVVSYKLN
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatttttgataccgaaactacaggtcttcctgccaattataatgcacccgta
tccgatacgaacaattggccaaggtgtattcaaattgcctggcagttacacgatgcatta
ggaaacctggttgaacatgaggactttctggtcaggcccgatggatttaacattccatac
gatgcagaacgtatccacggtatctctacagaattagccacagaacaaggtattgatatc
cgtgaagcagtagagaaattcaacattgccctgtccaaagctaaatttgtagtcggacag
aatatcggctttgacgtcaatattatgggcgctgaattttaccggttgggtatagaaagc
cccatggcccaaatgcctgttctggatacctgtacagaagttaccgccaacttattaaag
attccaggtggtagagggggcaggttcaaactgccgacactgaccgaattacacagctac
ctttttggcgttccatttgcagaagcacacaacgcaacagcagatgtggaagcgactaca
cgttgtttccttcaattggttaaaatggaggtttttacccccgaacagctccaagctgat
caggagtatatccgttcctttatcgccagccaaccagcagtcataccaagtgcaggcatt
cagcacattaaccttaaagcggcctctgatgaaatcaggaaaagacaagccaaagcagaa
ggcccgggcttatcaaaacaagacttaaaagacaaccagcaagaacttaaagacgcaaca
tttgtccacctgcacaaccatacgcagttttcagtcttgcagtctaccattaatattcca
ggcctgatcgcagcagcagcagcagataaaatgcctgccgtggccatgactgatcacgcc
aatatgatgggtgcctttcattttgtgaaccaggtactgaaccataataaaggtgttgaa
gccagaaataatgcagccatagaaaaaggagaagaaccagcagaattacccattacaccg
attgtaggctgcgaattctttgtctgtgaaaatcaccttgataaatcccgtaaagacaac
ggttatcaaatggtactgctcgctaagaataaaacaggttaccacaatctggctaaaatg
tcttccatcgcctatacgaagggattttactatatcccgaggattgaccggaatgtcatc
gaacaatataaagaagacatcattgtgctttccggaaacctgtatggtgaaatagccagt
aaaatcctgaatatgggtgaaaaccaggctgaagaagcattaatctggtggaaatcacta
ttcggtgccgatttctatatggagattatgcgccataaccaggatgatgaaaccgtagtc
aataaaacgctgatctccttagctcaaaagcatgatattaagctaattgcgaccaataat
acctattacattaataaaaaagatgccaacgcacacgatattttactctgcgtaaaagat
gcagaaaagcaggcaacacctataggcaggggacgtggataccgttacggcttacctaac
caggaatattatttcaaatcttcagaagagatgaaaaagctgtttgcggatcttccggaa
gcaattttaaatattcaggaaatagtagacaaaatatcgatctacaaacttgccagagag
gtactcttacctaaatttgatattcctgaacaatttttagtgcaggaagatgaagatgac
gcaggtaaaagaggagagaataaatatttacgccaccttacttttgttggggcagaaaaa
agatacggagaacttacgcccgaaattatagaacgtctggactttgagcttcagaccatt
gagaaaacaggctatccgggttacttcctgattgtacaggattttatcagggaagccaga
aatctggatgtatctgttggcccgggacgtggttcggctgcgggatctgtagtcgcttac
tgtctgtggatcactaatattgacccgatcaagtatgacctccttttcgagcgtttcctg
aatcctgaccgggtatcgatgcctgatattgatatcgattttgatgatgagggcaggggc
cgtgtcatggactatgtcatcaagaaatatggctcaaaccaggtggcgcagatcatcacc
tatggtacaatggcggctaagtcctctattaaagatacagcccgcgtattagacctgcca
ctttttgaagctgataaaatagcgaagcttatccctaacctgaagcttgccaaaatcttt
aacctcgatgagaaatcactccggggagctttacgtgcagacgaatatgagaaagttgta
gagctgaaagatattgctgactccaaaagcttaagtgccgaaacgatacaacaagccagg
atactggaaggttcattaagaaataccggtatacatgcctgcggggtaatcattacgcca
gacgatatcaccaactatgtgcctgtggccatggccaaagattccgatctgtacgtcacc
cagtttgataactctgtggtagaaagtgccggactgttgaaaatggactttttggggctg
aaaacactgaccctgattaaagataccgttaaactggttcgcttaagaaccggtattcag
cttgaccccgacgaatttcctattgacgatgtcaggacttatgagttgttccagcgtgga
gaaaccatcggtatcttccagtacgagtctaccgggatgcaaaaatacatgaaagaatta
aagcctaccgtattcggagatttgattgccatgaatgcattgtatcgtccagggccactg
gaatatatcccaagttttgtccgcaggaaaaacggagaggaagaaatcaagtacgatttg
gacgcctgcgaagaatacctgaaggaaacctatggaattacagtataccaggaacaggtg
atgcttttgtcacagaaacttgctggttttactaaaggtgaagccgatgtactgcggaag
gcaatgggtaaaaaacagaaagatgtgctcgataagatgaaacctaaatttgtcgcccag
gcagcagaaaaaggacatgcaccggctacactggagaaaatatggaaagactgggaagca
ttcgcgtcttacgccttcaacaaatctcactctacctgttacgcctggattgcttaccag
actgcttatttgaaagcacattacccggcagaatatatggctgcggtactgacgaataat
atgagtgatattaagcaggtagcctttttcatggaagaatgtaaacaaatgggcgtaaga
gtacttggcccggatgtgaatgaatccattttgaagttctctgtaaacccccagggagaa
gtacgttttggtctttccggaattaaaggagtaggggagaaagccgtagaaagtatcatt
gaagaacgcacgaatggtggattctacaatagtatttatgactttgccagacgctccaat
acccgtacagtgaataagaaagcctatgagagtttcgtttatagtggagcttttgatagc
ttcggtttccaccgtgcacaattcttctttgtagggattaacgataagctcaacggtatt
gaaaagctgatcaagtattccaatgatttccagaacagtgaatcatctgcacaatcttcg
ctgtttggcggtacggttgcagatatgatcaatgaacctaccttacctgttgctccagaa
tggactttaatagaccggctgaaatacgagaaggatgcaatcgggattttcctgagcggg
cacccgcttgataactataaattagagctgaaagaattctgccagcacaacgtccgtcac
ctgtctgttgtcaataaaatacggatgggagatacaaatgaagacgtattggcagagttt
gagcaactcaaaaacagggaactggtagtcggcggactggttgtaatctccgcacaacgg
atgactaaaaccggtaaaccttttggtactattgtgtttgaagattataacgacagttgc
gaacttgctttatttggagaagacttcgtgaaattcaagcaatttatgaccgatggttat
ttcctgcaaatccgtggccgtgtgggagaacgcttccgtaaagaaggtgactgggagttt
aaaatcacttctatagcccttttatcagatttaagagataaactggctaaatgtatcacc
atacagattccaattcagggaattaatgatcagattattactcagattctggcgatgatt
gaagaaaataaggaaaatacagaacaacaaaattgtcaattgaattttgttgtgtacgac
cgggaacaaaatgtttcgcttgatcttccttctaagtcgttgaaaatcaaccctgataat
gcatttttggaacagctgaaagcgctgaatgtggtgagttataagttgaactaa
DBGET
integrated database retrieval system
