Pedobacter cryoconitis: AY601_3423
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Entry
AY601_3423 CDS
T04341
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pcm
Pedobacter cryoconitis
Pathway
pcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AY601_3423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcm03021
]
AY601_3423
03400 DNA repair and recombination proteins [BR:
pcm03400
]
AY601_3423
Enzymes [BR:
pcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AY601_3423
Transcription machinery [BR:
pcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AY601_3423
DNA repair and recombination proteins [BR:
pcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AY601_3423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AMQ00289
UniProt:
A0A127VH86
LinkDB
All DBs
Position
complement(4071300..4075592)
Genome browser
AA seq
1430 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLASPEAILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQSGLMEEQGIQYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYNLRHQAANETSQQRKNEALKRLQVVEAFRGA
RTRIENNPEWMIIKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGIVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGHAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDENRVVN
GQDFSFYSPEEVIIAYNEKRIDLHAFIKVKVNVKDSDGNIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGDVVKVTGMSRAARFLDDIKELGFQMAFRGGLSFNLQDVNIP
AEKQVLLEQASAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTSFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNAADCGTLRGMYTTALKDNEDIVE
PLYDRILGRISLHDVFNPLDGALLVGAGQDIDEDIAKAIEESPLEGVEIRSVLTCENKRG
VCALCYGRNLATGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAK
FDGIIEFENVRTVANDTGEQGVKQIVLGRSGEFKIVEKGTGKVIMTNNIPYGSFLYVEEG
AEIKKGDKICSWDPYNAVIISEFAGKIEFDAIIEGVTFREESDEQTGHREKVIIDTRDKT
KNPSVRVVDKKGELIRQYNIPVGAHVSIDDGEAVKTGQILVKIPRATGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMTIESKDGEIKKYLVPLSKHILVQDND
FVKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQ
KVHIEDPGDTTFLENNSVDRWDFMIENDDIYDKKVVIDAGDSNTVKPGQILSLRKLRDEN
SQLKRKDLKQIEVRDARSATASSVLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKR
DNMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEEIEA
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacctcgattaccattagtttg
gcatcgccggaggctattttagagcgctctagtggtgaggtgttaaaacctgagactatt
aattatcgtacttacaaacctgaacgtgatggtttgttctgcgagcgtatttttggtccg
gtaaaagattacgaatgtcactgtggtaaatacaaacgtatccgttataaaggtattgtt
tgtgaccgttgtggtgttgaggtaacggagaaaaaagtgcgtagagagcgtatgggtcac
atcaacttggtggttcctgttgcgcatatctggtatttccgttcactgccaaacaaaatt
ggttacttattaggccttcctaccaaaagattagatttgattatttactacgagcgttat
gtagttattcaatctggtttgatggaagaacaaggtatccagtatatggatttccttact
gaggaagagtaccttgatattcttgataaattacctaaagaaaaccaatacttagacgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattgaaa
cgtattgacttagatactttatcttataacttacgtcaccaggctgcaaacgagacttct
caacaacgtaaaaacgaagcattaaaacgtttacaagttgtggaagctttccgtggtgca
agaacacgtattgaaaataatccagaatggatgattatcaaaattgttcctgttattcca
ccggaattacgtccgttagtacctcttgaaggtggtcgtttcgctacttcagatttaaat
gatctgtaccgtcgtgtgattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggttattttacgtaacgaaaaacgtatgttacaggaagctgtagattcgtta
ttcgataactcacgtaaagtaaatgcggttaaaactgaaggtaaccgtgctttgaaatct
ctttcagatatcctgaaaggtaaacaaggtcgtttccgtcagaatttattgggtaaacgt
gtggattactctgcgcgttcggtaattgttgtaggtccaaaccttaaattacacgaatgt
ggtttacctaaagatatggctgctgagcttttcaaaccgtttatcattcgtaagatgatc
gaacgtggaatcgtgaaaacagttaaatctgcaaagaaaattgtagatagaaaagaccca
ttggtttgggacattcttgagaacgttttaaaaggtcaccctgtattactgaatcgtgca
cctacgctgcacagattgggtatccagtctttccagcctaaattggtggaaggaaaagca
atccagttacacccgttagtgtgtactgcattcaacgccgattttgacggtgaccagatg
gctgtgcatttacctttaggtcatgctgctattttggaagcccaggtattgatgttagct
gcgcacaacattctgaaccctgcaaacggtactccgattactgtaccttctcaggatatg
gttttgggtctttattacattactaaaggccgcagaactgacgaaaaccgtgtggttaac
ggacaggatttctcattctattctccggaagaagttatcattgcttacaatgagaaacgt
atcgatcttcacgcatttatcaaagtaaaggtaaatgttaaagattctgacggaaatatt
gttaataaactaactgaaactactgtcggtcgtgtactatttaatcaaatggttccggaa
gaagttggttatatcaatgaattgctgactaaaaaatcactgagagatattatcggtgat
gtagtaaaagttaccggtatgtcacgcgctgccagattcttggatgatatcaaagaatta
ggtttccaaatggcattcagaggtggactatcgtttaacttacaggatgtaaatatccct
gcagagaaacaagttcttttagagcaagcttctgctgaagttgaagaggtaaggaataac
tataacatgggattcattaccaacaacgagcgttataatcagattatcgatatctggact
cgtatcaacaaccgtttaacatcattcgtgatgactcagttatctagcgataaccaagga
tttaactcggtatatatgatgcttgactctggagcacgtggatctaaagagcagattcgt
cagctttgcggaatgcgtggtctgatggcaaaacctcagaaatcaggttcgggtggtgaa
attattgagaatccgattctttcgaactttaaagaaggactatcagtattagaatacttt
atctctacccacggtgcgcgtaaaggtttggcggatacagcgttaaaaactgcagatgct
ggttacctgacccgtcgtttacatgacgttgctcaggatatgatcgtgaacgctgctgat
tgtggtactttaagaggtatgtatactactgcgttgaaagataacgaagatatcgttgaa
ccattatatgacagaattttaggtcgtatttcacttcatgatgtatttaatcctctggat
ggtgcattattagtaggtgctggtcaggatattgatgaagacatcgcaaaagcaatcgaa
gagtctcctttagaaggcgtggaaatacgttcagtattgacatgtgaaaacaaaagaggt
gtttgtgcgctttgttacggccgtaaccttgcaacaggtaaacgtgttcaacgtggagaa
gctgtcggtgtaattgctgcacagtctatcggtgagccgggtacacagttaacattacgt
acgttccacgtgggtggtaccgcatcgaacattgctgctgaatctcagatcaatgcgaag
tttgatggtatcatagaatttgaaaacgttcgtactgtagcaaatgatacaggtgagcaa
ggtgtgaaacaaattgttttaggccgttcaggtgaattcaaaatcgtagaaaaaggtact
ggtaaagttatcatgaccaataatatcccttacggttcattcttatatgttgaagaagga
gctgaaattaaaaaaggagataagatttgttcatgggatccatataacgcggttattatc
tcagagtttgccggtaaaatcgaatttgatgcaattattgaaggtgttaccttccgtgaa
gagtcagatgagcaaactggtcaccgtgagaaagtaattatcgatacacgtgataaaact
aaaaatccatcagtaagagtagtagataaaaaaggtgaattaatcagacagtataacatt
cctgttggtgctcacgtttctatcgatgatggagaagcagttaaaactggtcagatctta
gttaaaatccctcgtgctacaggaaaaacaagagatattacgggtggtttaccacgtgta
acagaattgttcgaagcacgtaacccttctaatccagctgtagtaactgagattgatggt
gtagtaactttaggtggtgtgaaacgtggtaatcgtgagatgactatcgaatcaaaagat
ggtgagatcaagaaatatcttgtaccattatctaaacacatcctggttcaggacaatgac
ttcgtgaaagctggtatgccattatcagacggatcgatttctcctgcggatatcttggca
attaaaggtcctgctgctgtacaagaatacttagtgaatggtatccaggaagtttaccgt
ttacaaggggtgaaaatcaatgataaacactttgaggttattgtacaccagatgatgcag
aaagttcatattgaagatccgggtgatactacattcttagaaaataactctgtagatcgt
tgggacttcatgattgaaaacgatgacatctatgacaagaaagttgttattgatgctggt
gattcaaacactgttaaaccaggtcagattctttctctgcgtaaattaagagacgaaaat
tctcaattgaaacgtaaagacttgaaacagatcgaagttcgtgatgcaagatcagcaact
gctagttctgtgttacaaggtattacacgtgcatcattaggtactaaatcattcatctct
gcagcttccttccaggaaactacaaaagtattgaacgaagctgcaattgcaggtaaacgt
gataacatgcttggattgaaagaaaacgtaatcgttggtcacttgattccttcaggtact
ggtgttcgtggatacgaacgtattatcgttggttcacaagaagagtatgacaaattatta
gcttcgaaacaagaagaagaaatagaagcataa
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integrated database retrieval system
